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Fig. 1 | BMC Microbiology

Fig. 1

From: The Listeria monocytogenes Core-Genome Sequence Typer (LmCGST): a bioinformatic pipeline for molecular characterization with next-generation sequence data

Fig. 1

Listeria monocytogenes high-confidence core profiles grouped by nucleotide distances. A cladogram was calculated by aligning and concatenating 1013 loci that comprise the L. monocytogenes high-confidence core (HCC) genomes of 114 taxa and analyzing the resulting alignment of 1,067,173 nucleotide positions with the Randomized Axelerated Maximum Likelihood tool (GTRCATI + 25γ). The best of 100 bootstrap replicates is shown. Nucleotide distances were measured with PHYLIP. Taxa were grouped by evolutionary lineage (I, II, or III) and those that have 100 and 10 or fewer nucleotide differences, while unique HCC profiles that differ by no more than 10 nucleotides were numbered in the order that they were processed

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BMC Microbiology

ISSN: 1471-2180

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