Table 1 Additional information on PBGCs and whether the initial identification of the AOI by BAGEL3 was based on the presence of bacteriocin-associated genes (context) or a specific bacteriocin structural gene
Potential Producer | Phylum | Class | BAGEL3 prediction |
|---|---|---|---|
Bifidobacterium longum subsp. infantis JCM 1222 | Actinobacteria | Lantibiotic | Context |
Bifidobacterium sp. 12 1 47BFAA | Actinobacteria | Lantibiotic | BLD_1648 |
Eggerthella sp. HGA1 | Actinobacteria | >10 kDa | Linocin M18 |
Bacteroides dorei DSM 17855 | Bacteroidetes | Sactipeptide | Context |
Bacteroides fragilis 3 1 12 | Bacteroidetes | Sactipeptide | Context |
Bacteroides sp. 2 1 16 | Bacteroidetes | Lantibiotic | Manual |
Bacteroides sp. 2 1 56FAA | Bacteroidetes | Unmodified | Manual |
Bacteroides sp. 9 1 42FAA | Bacteroidetes | Sactipeptide | Context |
Bacteroides uniformis ATCC 8492 | Bacteroidetes | Sactipeptide | Context |
Anaerofustis stercorihominis DSM 17244 | Firmicutes | >10 kDa | Linocin M18 |
Bacillus sp. 7 6 55CFAA CT2 | Firmicutes | >10 kDa | Colicin E9 |
Bacillus sp. 7 6 55CFAA CT2 | Firmicutes | Lantibiotic | Haloduracin |
Dorea formicigenerans 4 6 53AFAA | Firmicutes | Sactipeptide | Context |
Enterococcus faecalis PC1.1 | Firmicutes | >10 kDa | Enterolysin A |
Enterococcus faecalis TX1302 | Firmicutes | >10 kDa | Enterolysin A |
Enterococcus faecalis TX1302 | Firmicutes | Lantibiotic | Context |
Enterococcus faecalis TX1341 | Firmicutes | >10 kDa | Enterolysin A |
Enterococcus faecalis TX1342 | Firmicutes | >10 kDa | Enterolysin A |
Enterococcus faecalis TX1342 | Firmicutes | Lantibiotic | Context |
Enterococcus faecalis TX1467 | Firmicutes | >10 kDa | Enterolysin A |
Enterococcus faecalis TX1467 | Firmicutes | Lantibiotic | Context |
Enterococcus faecalis TX2137 | Firmicutes | >10 kDa | Enterolysin A |
Enterococcus faecalis TX2137 | Firmicutes | Lantibiotic | Context |
Enterococcus faecalis TX4244 | Firmicutes | >10 kDa | Enterolysin A |
Enterococcus faecalis TX4244 | Firmicutes | >10 kDa | Enterolysin A |
Holdemania filiformis DSM 12042 | Firmicutes | >10 kDa | Linocin M18 |
Lactobacillus acidophilus ATCC 4796 | Firmicutes | >10 kDa | Enterolysin A |
Lactobacillus acidophilus ATCC 4796 | Firmicutes | >10 kDa | Helveticin J |
Lactobacillus antri DSM 16041 | Firmicutes | >10 kDa | Enterolysin A |
Lactobacillus brevis subsp. gravesensis ATCC 27305 | Firmicutes | Unmodified | Plantaricin NC8 |
Lactobacillus delbrueckii subsp. lactis DSM 20072 | Firmicutes | >10 kDa | Enterolysin A |
Lactobacillus helveticus DSM 20075 | Firmicutes | >10 kDa | Helveticin J |
Lactobacillus helveticus DSM 20075 | Firmicutes | >10 kDa | Helveticin J |
Lactobacillus ultunensis DSM 16047 | Firmicutes | >10 kDa | Helveticin J |
Lactobacillus ultunensis DSM 16047 | Firmicutes | >10 kDa | Enterolysin A |
Lactobacillus ultunensis DSM 16047 | Firmicutes | >10 kDa | Helveticin J |
Listeria innocua ATCC 33091 | Firmicutes | LAP | Context |
Marvinbryantia formatexigens DSM 14469 | Firmicutes | Sactipeptide | Context |
Roseburia intestinalis L1 82 | Firmicutes | Sactipeptide | Context |
Ruminococcus obeum A2 162 | Firmicutes | Lantibiotic | Context |
Ruminococcus sp. 5 1 39B FAA | Firmicutes | Lantibiotic | Context |
Streptococcus anginosus 1 2 62CV | Firmicutes | Unmodified | Multiple |
Streptococcus infantarius subsp. infantarius ATCC BAA 102 | Firmicutes | Unmodified | Multiple |
Streptococcus sp. 2 1 36FAA | Firmicutes | Class IIc | Context |
Fusobacterium ulcerans ATCC 49185 | Fusobacteria | >10 kDa | Linocin M18 |
Fusobacterium varium ATCC 27725 | Fusobacteria | >10 kDa | Linocin M18 |
Arcobacter butzleri JV22 | Proteobacteria | >10 kDa | Colicin E9 |
Escherichia coli MS 110 3 | Proteobacteria | >10 kDa | Colicin |
Escherichia coli MS 110 3 | Proteobacteria | >10 kDa | Colicin |
Escherichia coli MS 119 7 | Proteobacteria | >10 kDa | Colicin |
Escherichia coli MS 124 1 | Proteobacteria | >10 kDa | Colicin |
Escherichia coli MS 146 1 | Proteobacteria | >10 kDa | Linocin M18 |
Escherichia coli MS 153 1 | Proteobacteria | >10 kDa | Colicin |
Escherichia coli MS 16 3 | Proteobacteria | >10 kDa | Colicin |
Escherichia coli MS 16 3 | Proteobacteria | >10 kDa | Colicin |
Escherichia coli MS 16 3 | Proteobacteria | >10 kDa | Colicin |
Escherichia coli MS 185 1 | Proteobacteria | >10 kDa | Colicin E9 |
Escherichia coli MS 196 1 | Proteobacteria | >10 kDa | Colicin-10 |
Escherichia coli MS 200 1 | Proteobacteria | >10 kDa | Colicin |
Escherichia coli MS 21 1 | Proteobacteria | >10 kDa | Colicin |
Escherichia coli MS 45 1 | Proteobacteria | Microcin | Microcin H47 |
Escherichia coli MS 45 1 | Proteobacteria | >10 kDa | Colicin |
Escherichia coli MS 57 2 | Proteobacteria | >10 kDa | Colicin E9 |
Escherichia coli MS 78 1 | Proteobacteria | >10 kDa | Colicin |
Escherichia coli MS 85 1 | Proteobacteria | >10 kDa | Colicin E9 |
Escherichia coli SE11 | Proteobacteria | >10 kDa | Colicin |
Escherichia sp. 3 2 53FAA | Proteobacteria | >10 kDa | Colicin |
Klebsiella sp. MS 92 3 | Proteobacteria | >10 kDa | Klebicin B |
Providencia rettgeri DSM 1131 | Proteobacteria | >10 kDa | Colicin A |
Yokenella regensburgei ATCC 43003 | Proteobacteria | Microcin | Context |
Anaerobaculum hydrogeniformans ATCC BAA 1850 | Synergistetes | >10 kDa | Linocin M18 |
Synergistes sp. 3 1 syn1 | Synergistetes | >10 kDa | Linocin M18 |