Skip to main content

Advertisement

Table 4 Differentially expressed genes related to the development and conidial formation of A. flavus

From: Deep sequencing analysis of transcriptomes in Aspergillus flavus in response to resveratrol

Gene ID Gene Name RPKM Log2(AM-Res/AM) q value DEGs Annotated gene function
AM AM-Res
CADAFLAG00011929 AFLA_101920 4.6010 1.5649 −1.5559 1.249E-88 Yes Extracellular developmental signal biosynthesis protein FluG
CADAFLAG00007028 AFLA_131490 76.2979 53.7967 −0.5041    Hypothetical protein
CADAFLAG00007282 AFLA_134030 7.7607 3.5087 −1.1452    Developmental regulator FlbA development.
CADAFLAG00007610 AFLA_137320 64.9838 16.8385 −1.9483 2.173E-07 Yes C2H2 conidiation transcription factor FlbC
CADAFLAG00003623 AFLA_017380 67.9510 41.5711 −0.7089    Hypothetical protein
CADAFLAG00011576 AFLA_098380 0.4394 0.4080 −0.1068    Conidial hydrophobin RodA/RolA
CADAFLAG00003311 AFLA_014260 0.0000 0.2077 _    Conidial hydrophobin RodB/HypB
CADAFLAG00003719 AFLA_018340 74.9734 43.1293 −0.7977    G-protein complex alpha subunit GpaA/FadA
CADAFLAG00006026 AFLA_046990 173.0674 78.9994 −1.1314 1.435E-55 Yes APSES transcription factor StuA (stunted)
CADAFLAG00007519 AFLA_136410 142.1301 101.1580 −0.4906    Transcriptional regulator Medusa(medusa)
CADAFLAG00001065 AFLA_082850 0.9080 0.4216 −1.1068    C2H2 type conidiation transcription factor BrlA
CADAFLAG00002337 AFLA_029620 1.5396 0.2376 −2.6962    Transcription factor AbaA
CADAFLAG00011194 AFLA_052030 11.7189 5.8671 −0.9981    Regulatory protein wetA
CADAFLAG00006026 AFLA_046990 173.0674 78.9994 −1.1314    Cell pattern formation-associated protein stuA
CADAFLAG00002704 AFLA_033290 27.7370 19.7674 −0.4887 7.824E-10   Regulator of secondary metabolism LaeA
CADAFLAG00008070 AFLA_066460 16.3529 13.0959 −0.3204 1.54E-32   Developmental regulator AflYf / VeA
CADAFLAG00000929 AFLA_081490 33.9585 43.1005 0.3439    Nucleoside diphosphatase Gda1/VelB
CADAFLAG00002131 AFLA_027560 22.5485 37.5174 1.2854 1.77E-07 Yes Vacuolar protein sorting-associated protein 13
CADAFLAG00003658 AFLA_017730 24.5015 41.4414 1.3091 0.0002471 Yes Regulator of V-ATPase in vacuolar membrane protein 1
CADAFLAG00005274 AFLA_039470 27.8848 75.9818 1.9970 1.34E-11 Yes Vacuolar calcium ion transporter
CADAFLAG00006698 AFLA_060890 137.9586 260.6940 1.4690 5.93E-15 Yes Vacuolar amino acid transporter 3
CADAFLAG00010071 AFLA_130130 166.9408 312.7826 1.4567 6.59E-09 Yes Putative vacuolar protein sorting-associated protein TDA6
Novel00107 Novel00107 32.5194 66.4116 1.5810 0.0032328 Yes Vacuolar protein sorting-associated protein 13
CADAFLAG00011638 AFLA_099000 317.3651 906.9007 2.0657 1.19E-49 Yes Superoxide dismutase [Cu-Zn]
CADAFLAG00010511 AFLA_004450 5.3195 1.3098 −1.4711 6.84E-09 Yes Nonribosomal peptide synthetase 12
  1. RPKM: Reads per kilobase per million reads; q value: corrected p value; DEGs: differently expressed genes; AM-Res (Treatment) and AM (Control): A. flavus was cultured in A&M medium with or without resveratrol, respectively; log2(fold_change) = log2(AM-Res/AM); log2(fold_change) > 0: the expression of a gene was up-regulated; log2(fold_change) < 0: the expression of a gene was down-regulated