Table 2 The genus-level taxonomy of abundant core OTUs of the porcine fecal and nasal microbiotas
From: Longitudinal study of the early-life fecal and nasal microbiotas of the domestic pig
Age (days) | Genera of the core OTUs* of the porcine microbiotas (% of pigs with OTU) | |
|---|---|---|
Fecal Microbiota | Nasal Microbiota | |
1 | Escherichia (Shigella) (100), Clostridium sensu stricto (100) | Globicatella (100), Haemophilus (100), Clostridium sensu stricto (100), Rothia (80), Staphylococcus (80) |
3 | Clostridium sensu stricto (100), Clostridium XIVa (80), Haemophilus (80), Lachnospiracea incertae sedis (80) | Globicatella (100), Rothia (100), Haemophilus (80), Clostridium sensu stricto (80) |
7 | Clostridium sensu stricto (80), Clostridium XIVa (80), Desulfovibrio (80) | Clostridium sensu stricto (80) |
14 | Escherichia (Shigella) (100), Clostridium XIVa (80) | Clostridium sensu stricto (80), Kingella (80), unclassified Firmicutes (80) |
21 | None | Clostridium sensu stricto (100), Kingella (80), unclassified Firmicutes (80) |
28 | Megasphaera (80), Lactobacillus (80), Acidaminococcus (80) | Lactobacillus (100), Erysipelotrichaceae incertae sedis (100), Enterococcus (100), Haemophilus (80), Blautia (80) |
35 | Megasphaera (100), Lactobacillus (100), Butyricicoccus (100), Erysipelotrichaceae incertae sedis (80), Selenomonas (80), Roseburia (80), Acidaminococcus (80), Faecalibacterium (80), unclassified Firmicutes (80) | Lactobacillus (100) |
42 | Megasphaera (100), Butyricicoccus (100), Erysipelotrichaceae incertae sedis (100), Roseburia (100), Acidaminococcus (100), Faecalibacterium (100), Lactobacillus (80), Selenomonas (80), Streptococcus (80), Prevotella (80), Clostridium XI, unclassified Firmicutes (80) | Lactobacillus (100), Sarcina (100), Erysipelotrichaceae incertae sedis (80), Kingella (80), unclassified Firmicutes (80) |
49 | Megasphaera (100), Butyricicoccus (100), Erysipelotrichaceae incertae sedis (100), Roseburia (100), Lactobacillus (80), Streptococcus (80), Prevotella (80), Gemmiger(80) | Lactobacillus (80), unclassified Firmicutes (80) |