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Table 4 Known candidate genes for Crohn’s disease and IBD with significant changes of expression in Caco-2 cells exposed to bifidobacteria strains grown on different carbon sources

From: Bifidobacteria grown on human milk oligosaccharides downregulate the expression of inflammation-related genes in Caco-2 cells

Comparison

B. infantis

B. breve

GLU vs HMO

  

 Upregulated by HMO

LTB

None

 

TNNI2

 

 Downregulated by HMO

LRRK2

FOS

 

SOCS1

ICAM1

  

TNFAIP3

  

TNFRSF18

LAC vs HMO

  

 Upregulated by HMO

None

DOK3

  

LAT

  

MUC1

  

RASIP1

 Downregulated by HMO

ICAM1

FOS

 

LRRK2

ICAM1

  

LTB

  

MAP3K8

  

TNF

  

TNFAIP3

  

TNFRSF18

  1. Candidate genes for Crohn’s disease: LTB, LRRK2, ICAM1, LAT, MUC1, RASIP1, TNF
  2. Candidate genes for Ulcerative colitis: TNNI2, SOCS1, FOS, TNFAIP3, TNFRSF18, DOK3, MUC1, MAP3K8