Table 2 Alleles of splA, corresponding probes, GenBank entries and typing data

slpA ₁₄₄₆

DQ117219.1

probe-1186 + probe-1201

RT-039

I

HP-22

slpA _23m63

ABKL02000030.1

AB489091.1 (partial), AB236726.1, AB621540.1, AB629936.1, AB675076.1, AF458883.1, AF458884.1, AF458885.1, AHJJ01000092.1, GU230470.1, GU230471.1, DQ117238.1 (partial)

probe-1169 + probe-1170

RT-009

I; V

ST-03, ST11slv*

HP-10, HP-11, HP-39

slpA ₆₃₀

AM180355.1

ADEJ01000377.1, AF448123.1, AF448124.1, AJ291709.1, DQ060634.1, DQ060635.1, DQ060636.1, DQ060637.1

probe-1166 + probe-1198

RT-012, RT-137, RT-150

I

ST-04, ST-54

HP-04, HP-24

slpA ₆₄₀₇

AB236728.2

ADEH01003569.1, GU230473.1

probe-1167 + probe-1168

RT-011, RT-049, RT-056, RT-071

I

ST-58

HP-03, HP-28, HP-29

slpA ₆₅₀₃

ADEI01000069.1

-

probe-1164 + probe-1197

-

“VI”

ST-127dlv

HP-40

slpA ₆₅₀₃ trunc.

-

-

probe-1164

RT-029, RT-081, RT-094

I

ST-09

(HP-30)

slpA ₇₉₆₈₅

AF448371.1/AB236727.1

AB239685.1; AB239686.1; AB261625.1; DQ117228.1; DQ117239.1AF448372.1, AF448373.1, AY004256.1

(probe-1163) + probe-1188

RT-017, RT-029

I; IV

-

HP-16, HP-36

slpA _ATCC43593

AF458879.1

AF448122.1, AF448121.1

probe-1176 + probe-1236

-

-

-

-

slpA _CF5

FN665652.1

AB236153.1, AB236154.1, AB236155.1, AB236156.1, AB236157.1, AB602320.1, AB704917.1, AB704920.1, AB704921.1, AB704922.1, AF448125.1, AF448126.1, AF448127.1, AGAA01000010.1, AGAB01000015.1, AJ300677.1, DQ060640.1, FN668375.1

probe-1234 + probe-1249

RT-017

IV

ST-37, ST-86

HP-35

slpA _DJNS05008

AB259786.1

-

probe-1174 + probe-1182

-

I

-

-

slpA _DJNS0578

AB258983.1

-

probe-1199 + probe-1200

RT-163

I

-

HP-05

slpA _HR02

AB236725.1

-

probe-1171 + probe-1237

-

-

-

-

slpA _J9952

AB232929.1

-

probe-1175 + probe-1195

-

-

-

-

slpA _J9952 trunc.

-

-

probe-1175

RT-013, RT-087

I

-

HP-19

slpA _JND08037

AB465011.2

AB259787.1

probe-1173 + probe-1243

RT-046

I

ST-35

HP-25

slpA _JND08162

AB533281.1

AB258978.1, AB258979.1, AB258980.1

probe-1193 + probe-1202

RT-103

I

-

HP-12

s lpA _JND08232

AB621541.1

-

probe-1184 + probe-1211

-

-

-

-

slpA _JND09041

AB602321.1

-

probe-1205 + probe-1206

RT-064

I

-

HP-17

slpA _Kohn

AF448119.1

-

probe-1158 + probe-1183

RT-015

I

-

HP-14, HP-15

slpA _MRY060211

AB256018.1

AB180242.1, AB181350.1, AB181351.1, AB453824.1, AB510162.1, GU230474.1, GU230475.1

probe-1178 + probe-1204

RT-005

I

ST-17

HP-18

slpA _OG45

AB231584.1

-

probe-1208

-

-

-

-

slpA _R12884

DQ060₆₃₀.1

AF458877.1, AF458878.1, AF478570.1, DQ060631.1, AB259785.1 (partial), AB518670.1 (partial), DQ060632.1

probe-1156 + probe-1203

RT-005, RT-023, RT-045, RT-054

I; III

ST-08

HP-20, HP-33

slpA _R12884 trunc.

-

-

probe-1156

RT-054

I; III

-

HP-07, HP-34

slpA _R12885

DQ060638.1

AB231583.2, AB257281.1, AB257282.1, AB534595.1, AB534596.1, AB534597.1, AB704918.1, AB704919.1, AF448365.1, AF448366.1, AF448367.1, AGAC01000036.1, DQ060639.1, DQ117221.1, DQ117224.1, FM160740.1, GU230469.1

probe-1209 + probe-1210

RT-014, RT-049

I

ST-42

HP-13

slpA _R13540

DQ060643.1

AB470267.1, ADDE01000013.1, ADNX01000091.1, ADVM01000007.1, AF448120.1, FN665653.1

probe-1177+ probe-1233

RT-078

V

ST-11 slv

HP-37, HP-38

slpA _R13541

DQ060628.1

DQ060629.1 AB240196.1; AB257283.1; AB257284.1

(probe-1155) + probe-1191

RT-002, RT-159

I

ST-08

HP-09

slpA _R13700

DQ060633.1

AF458880.1, AF458881.1, AF458882.1, AF478571.1

probe-1154 + probe-1192

RT-010

I

HP-27

slpA _R13711

DQ060641.1

AB258981.1, AB258982.1, AB518669.1, AF448368.1, AF448369.1, AF448370.1, DQ060642.1

probe-1232 + probe-1239

RT-012, RT-031, RT-057, RT-070, RT-094

I

ST-54, ST-55

HP-08, HP-21, HP-22, HP-23

slpA _BI9

DQ060627.1/ FN668944.1

AB249984.1, AB249985.1, AB257287.1, AB302932.1, ABHD02000026.1, ABKJ02000019.1, AF448128.1, AF448129.1, AJ300676.1, DQ060625.1, DQ060626.1, DQ117225.1, DQ117231.1, FN668944.1

probe-1151 + probe-1190

RT-001, RT-013, RT-015, RT-072, RT-087

I

ST-03, ST-45, ST-46

HP-01, HP-02

slpA _R20291

FM160739.1

ABKK02000030.1, AAML04000014.1, AB249986.1, AB257285.1, AB257286.1, AB269264.1, AB461839.1, AB461840.1, ABFD02000011.1, ABHE02000032.1, ABHF02000035.1, ABHG02000023.1, FN538970.1, FN545816.1, FN665654.1, FN668941.1

probe-1150 + probe-1153

RT-027

II

ST-01

HP-31, HP-32

slpA _Y5

AB538230.1

GU230472.1, AB269265.1

probe-1180 + probe-1196

-

-

-

-

splA negative

-

-

none

RT-081

I

-

HP-06, (HP-30)