Table 1 The organization of alternative splicing, overlapping gene clusters, polycistronic RNAs and alternative polyadenylation events in the PRV genome
From: Characterization of pseudorabies virus transcriptome by Illumina sequencing
Detected splice sites | Alternative polyadenylation | Convergently overlapping gene clusters | Divergently overlapping genes | Tandem gene clusters | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
Gene | Donor site | Acceptor site | Gene | Alternative polyadenylation signal | Coordinate | |||||
UL15 | D −76165 | A −73285 | UL35 | AAUAAA | 33133–33138 | UL51 | UL50 | UL52 | UL51 | UL52-UL54 |
US1 | D +115592 | A +115713 | UL44 | AAUAAA | 55768–55773 | UL30 | UL31, UL32 | UL50 | UL49.5 | UL48-UL46 |
D +115766 | A +115921 | UL22 | N/Aa | 63624 | UL33, UL34, UL35 | UL36 | UL29 | UL30 | UL31-UL32 | |
US1 | D −129158 | A −129037 | UL19 | AUAUAAA | 71005–710011 | UL44 | UL26.5, UL26, UL25, UL24 | UL32 | UL33 | UL33-UL35 |
D −128984 | A −128829 | UL28 | N/Aa | 18960 | UL8, UL9 | UL6, UL7 | UL37 | UL38 | UL39-UL40 | |
EP0 | D −97480 | A −97389 | UL5 | AAUAAA | 92065–92070 | UL41 | UL42 | UL24-UL26.5 | ||
D −97528 | CTO | N/Aa | 63538 | UL24 | UL23 | UL17-UL16 | ||||
UL21 | UL20 | UL14-UL11 | ||||||||
UL15 | UL14 | UL9-UL8 | ||||||||
UL10 | UL9 | UL7-UL6 | ||||||||
UL6 | UL5 | UL1-UL3.5 | ||||||||
US3-US4 | ||||||||||
US6-US7 | ||||||||||
US8-US9 | ||||||||||