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Table 3 Genes downregulated in the inoculated P.gingivalis W83

From: Gene expression changes in Porphyromonas gingivalis W83 after inoculation in rat oral cavity

Locus no. Putative identificationα Cellular roleα Fold
PG2008 TonB-dependent receptor, putative Transport and binding proteins: Cations and iron carrying compounds 0.2234
PG0929 hypothetical protein   0.2806
PG1129 ribonucleotide reductase Purines, pyrimidines, nucleosides, and nucleotides: 2'-Deoxyribonucleotide metabolism 0.2862
PG0684 ABC transporter, permease protein, putative Transport and binding proteins: Unknown substrate 0.3594
PG0683 ABC transporter, permease protein, putative Transport and binding proteins: Unknown substrate 0.3848
PG0682 ABC transporter, permease protein, putative Transport and binding proteins: Unknown substrate 0.3938
PG0522 tRNA delta(2)-isopentenylpyrophosphate transferase Protein synthesis: tRNA and rRNA base modification 0.4190
PG1648 RelA/SpoT family protein Cellular processes: Adaptations to atypical conditions 0.4192
PG0282 ABC transporter, ATP-binding protein Transport and binding proteins: Unknown substrate 0.4303
PG0946 ABC transporter, ATP-binding protein Transport and binding proteins: Unknown substrate 0.4347
PG1042 glycogen synthase, putative Energy metabolism: Biosynthesis and degradation of polysaccharides 0.4485
PG0890 alkaline phosphatase, putative Central intermediary metabolism: Other 0.4552
PG1100 hypothetical protein   0.4813
PG1993 excinuclease ABC subunit C DNA metabolism: DNA replication, recombination, and repair 0.4814
PG0226 transglutaminase-related protein Unknown function: General 0.4823
PG0141 spoOJ protein Cellular processes: Cell division 0.4865
PG0144 hypothetical protein   0.4888
PG1975 hemagglutinin protein HagC Cellular processes: Pathogenesis 0.4941
PG1982 CRISPR-associated Cas1 family protein Mobile and extrachromosomal element functions: Other 0.4950
PG1718 hypothetical protein   0.4955
PG0283 RND family efflux transporter MFP subunit Transport and binding proteins: Unknown substrate 0.4965
PG0001 chromosomal replication initiation protein DNA metabolism: DNA replication, recombination, and repair 0.4984
  1. αLocus number, identification and functional classification according to JCVI P.gingivalis genome database