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Table 3 Genes downregulated in the inoculated P.gingivalis W83

From: Gene expression changes in Porphyromonas gingivalis W83 after inoculation in rat oral cavity

Locus no.

Putative identificationα

Cellular roleα

Fold

PG2008

TonB-dependent receptor, putative

Transport and binding proteins: Cations and iron carrying compounds

0.2234

PG0929

hypothetical protein

 

0.2806

PG1129

ribonucleotide reductase

Purines, pyrimidines, nucleosides, and nucleotides: 2'-Deoxyribonucleotide metabolism

0.2862

PG0684

ABC transporter, permease protein, putative

Transport and binding proteins: Unknown substrate

0.3594

PG0683

ABC transporter, permease protein, putative

Transport and binding proteins: Unknown substrate

0.3848

PG0682

ABC transporter, permease protein, putative

Transport and binding proteins: Unknown substrate

0.3938

PG0522

tRNA delta(2)-isopentenylpyrophosphate transferase

Protein synthesis: tRNA and rRNA base modification

0.4190

PG1648

RelA/SpoT family protein

Cellular processes: Adaptations to atypical conditions

0.4192

PG0282

ABC transporter, ATP-binding protein

Transport and binding proteins: Unknown substrate

0.4303

PG0946

ABC transporter, ATP-binding protein

Transport and binding proteins: Unknown substrate

0.4347

PG1042

glycogen synthase, putative

Energy metabolism: Biosynthesis and degradation of polysaccharides

0.4485

PG0890

alkaline phosphatase, putative

Central intermediary metabolism: Other

0.4552

PG1100

hypothetical protein

 

0.4813

PG1993

excinuclease ABC subunit C

DNA metabolism: DNA replication, recombination, and repair

0.4814

PG0226

transglutaminase-related protein

Unknown function: General

0.4823

PG0141

spoOJ protein

Cellular processes: Cell division

0.4865

PG0144

hypothetical protein

 

0.4888

PG1975

hemagglutinin protein HagC

Cellular processes: Pathogenesis

0.4941

PG1982

CRISPR-associated Cas1 family protein

Mobile and extrachromosomal element functions: Other

0.4950

PG1718

hypothetical protein

 

0.4955

PG0283

RND family efflux transporter MFP subunit

Transport and binding proteins: Unknown substrate

0.4965

PG0001

chromosomal replication initiation protein

DNA metabolism: DNA replication, recombination, and repair

0.4984

  1. αLocus number, identification and functional classification according to JCVI P.gingivalis genome database