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Table 2 Comparison of large plasmids among STEC strains using BLASTN (coverage >90%, identity >90%)

From: Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-serotypes of Shiga toxin-producing Escherichia coli O104

Serotype

Strain name

Gene accession

Size (~Kb)

%GC

 

Virulence or other biomarker genes

AggR

AggB-C-D

saa

Ecf cluster

Hly cluster

excA

subA

SubB

espP

type IV pilus gene cluster

katP

espA

Etp cluster (type II)

msbB

stcE

toxB

O104:H7

RM9387

CP009104

169,634

49.5

-

-

-

-

+

+

+

+

+

+

-

-

-

-

-

-

O104:H21

94-3024

CP009106

161,447

49.5

-

-

-

-

+

+

+

+

+

+

-

-

-

-

-

-

O104:H21

BAA-178 (CDC 1994-3024) (CFSAN002236)

SRX319158

na

na

-

-

-

-

+

+

+

+

+

+

-

-

-

-

-

-

O104:H21

BAA-182 (CDC 1994-3023) (CFSAN002237)

SRX319159

na

na

-

-

-

-

+

+

+

+

+

+

-

-

-

-

-

-

O104:H4

2009EL-2050

NC_018651

109,274

45.3

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

NC_018654

74,213

47.1

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

O104:H4

2009EL-2071

NC_018662.1

75,573

47.2

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

O104:H4

2011C-3493

NC_018659

88,544

49.7

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

NC_018666

474,217

47.1

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

O104:H4

LB226692

SRR254209

na

na

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

O104:H4

TY-2482

SRX067313

na

na

+

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

O104:H4

C760-09

SRX078303

na

na

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

O104:H4

C777-09

SRX078304

na

na

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

O104:H4

C734-09

SRX078308

na

na

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

O104:H4

C754-09

SRX078302

na

na

-

+

-

-

-

-

-

-

-

-

-

-

-

-

-

-

O157:H7

Sakai

NC_002128.1

92,721

47.6

-

-

-

+

+

-

-

-

+

-

+

-

+

+

+

+

O157:H-

3072/96

NC_009602.1

121,239

49.7

-

-

-

+

+

-

-

-

-

-

-

-

+

+

+

-

O113:H21

EH41

NC_007365.1

165,548

49.6

-

-

+

-

+

+

+

+

+

+

-

-

-

-

-

-

O26:H11

Str. 11368

NC_013369.1

85,167

47.5

-

-

-

+

+

-

-

-

-

-

+

-

-

+

-

+

H30

FJ386569.1

168,100

50.2

-

-

-

+

+

+

-

-

+

+

+

-

-

+

-

+

O145

RM13514

CP006028

87,120

47.6

-

-

-

+

+

-

-

-

+

-

-

-

-

+

-

+

RM13516

CP006263

98,066

49.7

-

-

-

+

+

-

-

-

-

-

-

-

+

+

-

-

83-75

HM138194.1

90,103

47.5

-

-

-

+

+

-

-

-

+

-

+

-

-

+

-

+

O121:H19

MT#2

AGTJ01000001-AGTJ01000389

na

na

-

-

-

+

+

-

-

-

+

-

-

-

-

+

-

+

O103

APEC O103

NC_011964.1

124,705

50.8

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

Str. 12009

NC_013354.1

75,546

49.1

-

-

-

+

+

-

-

-

-

-

-

-

+

+

-

-

O45:K1:H7

S88

CU928146

133,853

49.3

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

O111-aEPEC

D275

KC340959.1

115,452

53.1

-

-

-

-

-

+

-

-

-

+

-

-

-

-

-

-

O111:H21

Str. 226

SRX160797

na

na

+

-

-

-

-

+

-

-

-

+

-

-

-

-

-

-

O91:H21

B2F1

AGTI01000001-AGTI01000233

na

na

-

-

-

-

+

+

-

-

+

-

-

-

-

-

-

-