Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-serotypes of Shiga toxin-producing Escherichia coli O104

Yan, Xianghe; Fratamico, Pina M; Bono, James L; Baranzoni, Gian Marco; Chen, Chin-Yi

doi:10.1186/s12866-015-0413-9

Table 1 Chromosome-encoded virulence genes, CRISPR, and IS elements profiling

From: Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-serotypes of Shiga toxin-producing Escherichia coli O104

Serotype	Strain name	Gene accession	Virulence, IS, and other biomarker genes
Serotype	Strain name	Gene accession	*fliCH4*	*fliCH7*	*fliCH21*	*wzxO104*	*wzyO104*	*stx2*	*tehB*	*iha*	*lpfa_O104*	*ent*	*tir*	*stx* ₁	*eae*	*Efa1*	*lpfa-O157*	*tccp*	*tccp2*	*IS629*	*CRISPR2*
O104:H7	RM9387	CP009104	-	+	-	+	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-
O104:H21	94-3024	CP009106	-	-	+	+	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-
O104:H21	BAA-178 (CDC 1994-3024) (CFSAN002236)	SRX319158	-	-	+	+	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-
O104:H21	BAA-182 (CDC 1994-3023) (CFSAN002237)	SRX319159	-	-	+	+	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-
O104:H4	2009EL-2050	NC_018650.1	+	-	-	+	+	+	+	+	+	-	-	-	-	-	-	-	-	+	+
O104:H4	2009EL-2071	NC_018661.1	+	-	-	+	+	+	+	+	+	-	-	-	-	-	-	-	-	+	+
O104:H4	2011C-3493	NC_018658.1	+	-	-	+	+	+	+	+	+	-	-	-	-	-	-	-	-	+	+
O104:H4	LB226692	SRR254209	+	-	-	+	+	+	+	+	+	-	-	-	-	-	-	-	-	+	+
O104:H4	TY-2482	SRX067313	+	-	-	+	+	+	+	+	+	-	-	-	-	-	-	-	-	+	+
O104:H4	C760-09	SRX078303	+	-	-	+	+	-	+	-	+	-	-	-	-	-	-	-	-	+	+
O104:H4	C777-09	SRX078304	+	-	-	+	+	+	+	+	+	-	-	-	-	-	-	-	-	+	+
O104:H4	C734-09	SRX078308	+	-	-	+	+	-	+	+	+	-	-	-	-	-	-	-	-	+	+
O104:H4	C754-09	SRX078302	+	-	-	+	+	-	+	+	+	-	-	-	-	-	-	-	-	+	+
O104:H^-	4281-7	FM872416.1	na	na	na	na	na	na	na	na	na	na	na	na	+	na	na	na	na	na	na
O91:H21	B2F1	AGTI01000001-AGTI01000233	-	-	+	-	-	+	+	+	+	-	-	-	-	-	-	-	-	-	-
O113:H21	CL-3	NZ_AGTH01000001-NZ_AGTH01000258	-	-	+	-	-	+	+	+	-	-	-	-	-	-	-	+	+	-	-
O157:H7	Sakai	NC_002695	-	+	-	-	-	+	+	+	-	+	+	+	+	-	+	+	+	+	-
O145:H28	4865/96	AGTL01000001-AGTL01000345	-	-	-	-	-	+	+	+	-	+	+	-	+	+	+	+	+	+	-
O45:H2	03-EN-705	AGTK01000001-AGTK01000433	-	-	-	-	-	-	+	-	+	+	-	+	+	+	-	+	+	+	-
O26:H11	Str. 11368	NC_013361	-	-	-	-	-	-	+	+	+	+	-	+	+	+	-	-	-	+	-
O121:H19	MT#2	AGTJ01000001-AGTJ01000389	-	-	-	-	-	+	+	-	-	+	-	-	+	+	-	+	+	+	-
O103:H2	Str. 12009	NC_013353	-	-	-	-	-	+	+	-	+	+	-	+	+	+	-	-	-	+	-
O111:H-	11128	NC_013364	-	-	-	-	-	+	+	+	+	+	-	+	+	+	-	-	-	+	-
O111:H21	Str. 226	SRX160797	-	-	+	-	-	+	+	-	-	-	-	-	+	-	-	+	+	+	-

na: there is no whole genome sequence but partial fragment available.

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ISSN: 1471-2180

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