Table 3 Major genomic features of the six sequenced L. ruminis strains
From: Lactobacillus ruminis strains cluster according to their mammalian gut source
Feature | Host and strains | |||||
|---|---|---|---|---|---|---|
Human | Bovine | Porcine | Equine | |||
S23 | ATCC 25644* | ATCC 27780 | ATCC 27782* | DPC 6830 | DPC 6832 | |
Genome size (bp) | 1,932,610 | 2,069,085 | 2,046,230 | 2,066,647 | 2,067,308 | 1,948,988 |
G + C content (%) | 43.7 | 43.7 | 43.3 | 43.4 | 43.3 | 43.0 |
CDS | 1932 | 1984 | 1976 | 1976 | 1980 | 1883 |
Estimated Coding density (%) | 85.2 | 85.1 | 84.3 | 84.0 | 83.4 | 83.7 |
tRNAs | 34 | 49 | 59 | 67 | 57 | 58 |