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Table 2 Up-regulated proteins in both clpA and clpP mutants of Pseudomonas fluorescens SS101

From: Lipopeptide biosynthesis in Pseudomonas fluorescens is regulated by the protease complex ClpAP

Locustag Gene Gene descriptions clpA /SS101 clpP /SS101
PflSS101_0002 dnaN DNA polymerase III, beta subunit 1.3 1.3
PflSS101_0021 qor NADPH_quinone reductase 1.25 1.6
PflSS101_0364 secB protein-export chaperone SecB 1.34 1.42
PflSS101_0509 thiC thiamine biosynthesis protein ThiC 1.33 1.28
PflSS101_0546 rnr ribonuclease R 1.27 1.27
PflSS101_0920 hisC_1 histidinol-phosphate transaminase 1.3 1.2
PflSS101_0926 mqo_1 malate_quinone-oxidoreductase 1.32 1.21
PflSS101_1161 argG argininosuccinate synthase 1.3 1.2
PflSS101_1203   TIGR00730 family protein 1.22 1.22
PflSS101_1209 fpr_2 ferredoxin--NADP+ reductase 1.28 1.24
PflSS101_1348 fabD acyl-carrier-protein S-malonyltransferase 1.26 1.32
PflSS101_1554   LamB_YcsF family protein 1.25 1.27
PflSS101_1626   short-chain alcohol dehydrogenase family protein 1.53 1.23
PflSS101_1652 cmk cytidylate kinase 1.35 1.36
PflSS101_1729   3-deoxy-7-phosphoheptulonate synthase 1.28 2
PflSS101_2196   AP endonuclease, family 2 1.65 2.12
PflSS101_3195   cold shock domain protein CspD 2.14 3.15
PflSS101_3348 bkdA2 2-oxoisovalerate dehydrogenase E1 component, beta subunit 1.26 1.23
PflSS101_3776   flagellin domain protein 1.21 2.14
PflSS101_3786 phhA phenylalanine-4-hydroxylase 1.24 1.81
PflSS101_3936   transcriptional regulator, GntR family 1.25 1.35
PflSS101_4181   conserved hypothetical protein 1.2 1.2
PflSS101_4298 tolB Tol-Pal system beta propeller repeat protein TolB 1.33 1.29
PflSS101_4316   PF04461 family protein 1.21 1.55
PflSS101_4394 thrC threonine synthase 1.29 1.43
PflSS101_4600 cbrB two-component response regulator CbrB 1.25 1.5
PflSS101_4631 dapB dihydrodipicolinate reductase 1.5 1.55
PflSS101_4632 dnaJ chaperone protein DnaJ 1.26 1.22
PflSS101_4676   conserved hypothetical protein 1.31 1.21
PflSS101_4945 rpsU ribosomal protein S21 1.25 1.25
PflSS101_5275 rnk regulator of nucleoside diphosphate kinase 1.52 1.65
PflSS101_5280 lysA diaminopimelate decarboxylase 1.23 1.27