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Table 1 Differentially expressed genes in A. salmonicida LFI1238 stimulated with 50 μM 2,2'-dipyridyl

From: The immediate global responses of Aliivibrio salmonicida to iron limitations

CDS

Gene

Product 1

Fold change 2

p-value 2

Transport/binding proteins

VSAL_I1734

 

heme receptor (pseudogene)

1.5

0.03

VSAL_I1751

tonB1

TonB protein (pseudogene)

5.0

0

VSAL_I1752

exbB1

TonB system transport protein

2.4

0.01

VSAL_I1754

hmuT

heme transporter protein, putative periplasmic binding protein

4.3

0

VSAL_I2257

feoA

ferrous iron transport protein FeoA

1.8

0.06

VSAL_I2258

feoB

ferrous iron transport protein FeoB

1.8

0.07

VSAL_I2259

feoC

ferrous iron transport protein FeoC

1.8

0

VSAL_I2588

fbpA

iron(III) ABC transporter, periplasmic iron-compound-binding protein

2.1

0.08

VSAL_II0110

 

TonB dependent receptor

3.4

0

VSAL_II0112

tolR2

biopolymer transport protein

2.0

0

VSAL_II0150

fhuC

ferrichrome transport ATP-binding protein

3.2

0

VSAL_II0151

fhuD

ferrichrome-binding periplasmic protein

3.2

0.01

VSAL_II0909

bfrH

ferrioxamine B receptor

3.3

0

VSAL_p320_27

 

iron ion ABC transporter, periplasmic component

2.4

0.01

VSAL_p320_29

 

iron ion ABC transporter ATP-binding protein

1.7

0.07

Adaptation

VSAL_I1749

huvX

heme uptake and utilization protein

1.7

0

Biosynthesis of cofactors, carriers

VSAL_I0134

bibA*

Bisucaberin siderophore biosynthesis protein A

7.6

0

VSAL_I0135

bibB*

Bisucaberin siderophore biosynthesis protein B

5.8

0.01

VSAL_I0136

bibC*

Bisucaberin siderophore biosynthesis protein C

1.9

0.06

VSAL_I1750

phuW

putative coproporphyrinogen oxidase

2.2

0

Cell envelope

VSAL_I1248

 

membrane protein

2.9

0

VSAL_I1785

 

putative exported protein

2.2

0

VSAL_I1786

 

putative iron-regulated protein

2.8

0

VSAL_I1864

 

putative outer membrane protein

4.2

0

VSAL_II0074

 

membrane protein

3.4

0

VSAL_II0111

 

putative exported protein

2.3

0

VSAL_II0717

 

putative membrane protein

1.6

0.02

VSAL_II0868

 

putative lipoprotein

3.4

0

sRNA

VSAL_I3102s

 

VSsrna22 small RNA RyhB

4.6

0

Unknown function, no known homologues

VSAL_I2980

 

hypothetical protein

1.5

0.1

VSAL_I2892

 

hypothetical protein

3.7

0

VSAL_II0148

 

hypothetical protein

3.8

0

  1. 1Annotated product of CDS 2Fold change values are shown for ≥ 1.5 differentially expressed genes with p-values ≤ 0.1. Positive fold change value indicate up-regulation compared to untreated control. * bibA is annotated as L-2,4-diaminobutyrate decarboxylase in the A. salmonicida genome annotations, and bibB and bibC are annotated as iucD and iucC, respectively [26,30].