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Table 1 Differentially expressed genes in A. salmonicida LFI1238 stimulated with 50 μM 2,2'-dipyridyl

From: The immediate global responses of Aliivibrio salmonicida to iron limitations

CDS Gene Product 1 Fold change 2 p-value 2
Transport/binding proteins
VSAL_I1734   heme receptor (pseudogene) 1.5 0.03
VSAL_I1751 tonB1 TonB protein (pseudogene) 5.0 0
VSAL_I1752 exbB1 TonB system transport protein 2.4 0.01
VSAL_I1754 hmuT heme transporter protein, putative periplasmic binding protein 4.3 0
VSAL_I2257 feoA ferrous iron transport protein FeoA 1.8 0.06
VSAL_I2258 feoB ferrous iron transport protein FeoB 1.8 0.07
VSAL_I2259 feoC ferrous iron transport protein FeoC 1.8 0
VSAL_I2588 fbpA iron(III) ABC transporter, periplasmic iron-compound-binding protein 2.1 0.08
VSAL_II0110   TonB dependent receptor 3.4 0
VSAL_II0112 tolR2 biopolymer transport protein 2.0 0
VSAL_II0150 fhuC ferrichrome transport ATP-binding protein 3.2 0
VSAL_II0151 fhuD ferrichrome-binding periplasmic protein 3.2 0.01
VSAL_II0909 bfrH ferrioxamine B receptor 3.3 0
VSAL_p320_27   iron ion ABC transporter, periplasmic component 2.4 0.01
VSAL_p320_29   iron ion ABC transporter ATP-binding protein 1.7 0.07
Adaptation
VSAL_I1749 huvX heme uptake and utilization protein 1.7 0
Biosynthesis of cofactors, carriers
VSAL_I0134 bibA* Bisucaberin siderophore biosynthesis protein A 7.6 0
VSAL_I0135 bibB* Bisucaberin siderophore biosynthesis protein B 5.8 0.01
VSAL_I0136 bibC* Bisucaberin siderophore biosynthesis protein C 1.9 0.06
VSAL_I1750 phuW putative coproporphyrinogen oxidase 2.2 0
Cell envelope
VSAL_I1248   membrane protein 2.9 0
VSAL_I1785   putative exported protein 2.2 0
VSAL_I1786   putative iron-regulated protein 2.8 0
VSAL_I1864   putative outer membrane protein 4.2 0
VSAL_II0074   membrane protein 3.4 0
VSAL_II0111   putative exported protein 2.3 0
VSAL_II0717   putative membrane protein 1.6 0.02
VSAL_II0868   putative lipoprotein 3.4 0
sRNA
VSAL_I3102s   VSsrna22 small RNA RyhB 4.6 0
Unknown function, no known homologues
VSAL_I2980   hypothetical protein 1.5 0.1
VSAL_I2892   hypothetical protein 3.7 0
VSAL_II0148   hypothetical protein 3.8 0
  1. 1Annotated product of CDS 2Fold change values are shown for ≥ 1.5 differentially expressed genes with p-values ≤ 0.1. Positive fold change value indicate up-regulation compared to untreated control. * bibA is annotated as L-2,4-diaminobutyrate decarboxylase in the A. salmonicida genome annotations, and bibB and bibC are annotated as iucD and iucC, respectively [26,30].