1Biofilm: Planktonic ratio | |||||
---|---|---|---|---|---|
Accession # | Protein name | Rep. 1 | Rep. 2 | Rep. 3 | 2Localization |
Amino acid biosynthesis | |||||
AAX87912.1 | glutamine synthetase, GlnA | 1.71 | 1.88 | Cytoplasmic | |
AAX87713.1 | ketol-acid reductoisomerase, IlvC | 1.26 | Cytoplasmic | ||
AAX87519.1 | D-3-phosphoglycerate dehydrogenase, SerA | 0.54 | Cytoplasmic | ||
AAX87314.1 | dihydrodipicolinate synthase, DapA | 0.66 | Cytoplasmic | ||
Biosynthesis of cofactors, prosthetic groups, and carriers | |||||
AAX87263.1 | NAD nucleotidase, NadN | 2.47 | 1.62 | 1.23 | Periplasmic |
AAX87920.1 | octaprenyl-diphosphate synthase, IspB | 0.71 | Cytoplasmic | ||
AAX87900.1 | putative heme iron utilization protein | 0.82 | Cytoplasmic | ||
Cell envelope | |||||
AAX88031.1 | transferrin-binding protein 1, Tbp1 | 1.86 | OMP | ||
AAX87746.1 | VacJ lipoprotein | 1.58 | OMP | ||
AAX87040.1 | rod shape-determining protein MreB | 1.41 | Cytoplasmic | ||
AAX88649.1 | acylneuraminate cytidylyltransferase, SiaB | 0.70 | Cytoplasmic | ||
AAX88164.1 | Outer membrane protein P5 | 0.58 | OMP | ||
Cellular processes | |||||
AAX88712.1 | predicted periplasmic or secreted lipoprotein | 1.57 | Periplasmic | ||
AAX87955.1 | protective surface antigen D15 | 1.44 | OMP | ||
AAX88561.1 | cell division protein MukB | 1.18 | Unknown | ||
AAX88143.1 | cell division protein FtsA | 0.76 | Cytoplasmic | ||
AAX87967.1 | catalase, HktE | 0.76 | Periplasmic | ||
Central intermediary metabolism | |||||
AAX87206.1 | putative sialic acid transporter, TRAP-type C4-dicarboxylate transport system, periplasmic component, SiaP | 0.67 | 0.63 | Periplasmic | |
DNA metabolism | |||||
AAX87735.1 | DNA mismatch repair protein MutS | 2.91 | Cytoplasmic | ||
AAX88107.1 | DNA ligase, LigN | 2.26 | Cytoplasmic | ||
AAX88664.1 | transcription-repair coupling factor, Mfd | 1.48 | Cytoplasmic | ||
AAX88280.1 | DNA-binding protein H-NS homolog | 1.40 | Cytoplasmic | ||
AAX88572.1 | DNA topoisomerase I, TopA | 1.38 | Cytoplasmic | ||
AAX87482.1 | DNA-binding protein HU | 1.31 | Cytoplasmic | ||
AAX87308.1 | UvrABC system protein A | 1.28 | Cytoplasmic | ||
AAX88029.1 | DNA polymerase III, beta chain, DnaN | 0.81 | Cytoplasmic | ||
Energy metabolism | |||||
AAX87718.1 | glycerophosphoryl diester phosphodiesterase precursor, Glp | 1.51 | 1.89 | Unknown | |
AAX88650.1 | putative NAD(P)H nitroreductase, NsfB | 1.80 | Unknown | ||
AAX87025.1 | citrate lyase alpha chain, citF | 1.38 | 1.71 | Cytoplasmic | |
AAX88575.1 | NAD(P) transhydrogenase subunit alpha, PntA | 1.43 | 1.62 | Cyto. Memb. | |
AAX88675.1 | NADP-dependent malic enzyme, Mao2 | 1.56 | Cytoplasmic | ||
AAX88704.1 | D-lactate dehydrogenase, Dld | 1.26 | Cyto. Memb. | ||
AAX88019.1 | 6-phosphofructokinase, PfkA | 0.52 | Cytoplasmic | ||
AAX87882.1 | fumarate reductase flavoprotein subunit, FrdA | 0.54 | Cyto. Memb. | ||
AAX88128.1 | transaldolase, TalB | 0.55 | Unknown | ||
AAX87573.1 | fructose-bisphosphate aldolase, Fba | 0.73 | 0.55 | Cytoplasmic | |
AAX88202.1 | acetate kinase, AckA | 0.70 | 0.55 | Cytoplasmic | |
AAX88159.1 | thioredoxin reductase, TrxB | 0.56 | Cytoplasmic | ||
AAX87856.1 | phosphoenolpyruvate carboxykinase, PckA | 0.57 | Cytoplasmic | ||
AAX88535.1 | fumarate hydratase class II, FumC | 0.59 | Cytoplasmic | ||
AAX87709.1 | triosephosphate isomerase, TpiA | 0.64 | Cytoplasmic | ||
AAX88580.1 | 1,4-alpha-glucan branching enzyme, GlgB | 0.66 | Cytoplasmic | ||
AAX88208.1 | malate dehydrogenase, Mdh | 0.66 | Unknown | ||
AAX87248.1 | flavodoxin, FldA | 0.68 | Cytoplasmic | ||
AAX87583.1 | aspartate ammonia-lyase, AspA | 0.70 | Cytoplasmic | ||
AAX87004.1 | glyceraldehyde 3-phosphate dehydrogenase, GapA | 0.70 | 0.78 | Cytoplasmic | |
AAX88293.1 | pyruvate kinase, PykA | 0.72 | Cytoplasmic | ||
AAX87574.1 | phosphoglycerate kinase, Pgk | 0.75 | Cytoplasmic | ||
AAX87971.1 | enolase, Eno | 0.77 | 0.81 | Cytoplasmic | |
AAX88160.1 | thioredoxin domain-containing protein, YbbN | 0.78 | Cytoplasmic | ||
AAX87237.1 | formate acetyltransferase, PflB | 0.79 | Cytoplasmic | ||
Fatty acid and phospholipid metabolism | |||||
AAX87797.1 | glycerol-3-phosphate acyltransferase, PlsB | 1.50 | Cyto. Memb. | ||
AAX87445.1 | long-chain-fatty-acid--CoA ligase, LcfA | 1.60 | Cyto. Memb. | ||
AAX88571.1 | probable acyl carrier protein phosphodiesterase, AcpD | 1.50 | Cytoplasmic | ||
Hypothetical proteins | |||||
AAX87451.1 | conserved hypothetical cupin superfamily metalloenzyme | 1.36 | Cytoplasmic | ||
AAX88259.1 | conserved hypothetical phosphate transport regulator | 0.65 | Cytoplasmic | ||
AAX87425.1 | conserved hypothetical protein | 0.73 | Unknown | ||
AAX88050.1 | conserved hypothetical protein | 0.80 | Cytoplasmic | ||
Protein fate | |||||
AAX87914.1 | peptidase B, pepB | 1.52 | Cytoplasmic | ||
AAX87592.1 | 60 kDa chaperonin, GroEL | 1.52 | Cytoplasmic | ||
AAX87863.1 | Xaa-Pro aminopeptidase, PepP | 1.51 | Cytoplasmic | ||
AAX88683.1 | chaperone protein DnaK | 1.42 | Cytoplasmic | ||
AAX87793.1 | protein-export protein SecB | 1.41 | Cytoplasmic | ||
AAX87272.1 | oligopeptidase A, PrlC | 1.37 | 1.28 | Cytoplasmic | |
AAX87706.1 | aminoacyl-histidine dipeptidase, PepD | 1.32 | Cytoplasmic | ||
AAX87591.1 | 10 kDa chaperonin, GroES | 0.42 | Cytoplasmic | ||
AAX87652.1 | peptidase E, PepE | 0.52 | Cytoplasmic | ||
AAX87816.1 | cell division protein FtsY | 0.56 | Cytoplasmic | ||
AAX88211.1 | thiol:disulfide interchange protein DsbC | 0.58 | Periplasmic | ||
AAX87741.1 | trigger factor, Tig | 0.64 | Cytoplasmic | ||
AAX88760.1 | cytosol aminopeptidase, PepA | 0.72 | Cytoplasmic | ||
Protein synthesis | |||||
AAX88424.1 | phenylalanyl-tRNA synthetase beta chain, PheT | 2.11 | Cytoplasmic | ||
AAX87782.1 | prolyl-tRNA synthetase, ProS | 2.00 | Cytoplasmic | ||
AAX87660.1 | 30S ribosomal protein S7, RpsG | 1.81 | Cytoplasmic | ||
AAX87825.1 | 50S ribosomal protein L3, RplC | 1.53 | Cytoplasmic | ||
AAX87593.1 | 50S ribosomal protein L9, RplI | 1.31 | Cytoplasmic | ||
AAX88652.1 | methionyl-tRNA synthetase, MetG | 1.29 | Cytoplasmic | ||
AAX87177.1 | Seryl-tRNA synthetase, SerS | 1.25 | Cytoplasmic | ||
AAX87580.1 | 30S ribosomal protein S21, RpsU | 0.49 | Cytoplasmic | ||
AAX87839.1 | 30S ribosomal protein S14, RpsN | 0.47 | Cytoplasmic | ||
AAX87952.1 | elongation factor Ts | 0.59 | 0.58 | Cytoplasmic | |
AAX87661.1 | elongation factor G, FusA | 0.61 | 0.76 | Cytoplasmic | |
AAX87855.1 | ribosome recycling factor, Frr | 0.68 | 0.73 | 0.62 | Cytoplasmic |
AAX87080.1 | cysteinyl-tRNA synthetase, CysS | 0.62 | Cytoplasmic | ||
AAX88252.1 | tyrosyl-tRNA synthetase, TyrS | 0.63 | Cytoplasmic | ||
AAX87851.1 | 50S ribosomal protein L17, RplQ | 0.66 | Cytoplasmic | ||
AAX87670.1 | 50S ribosomal protein L10, RplJ | 0.67 | Cytoplasmic | ||
AAX87910.1 | GTP-binding protein TypA/ BipA | 0.68 | Cyto. Memb. | ||
AAX87836.1 | 50S ribosomal protein L14, RplN | 0.71 | Cytoplasmic | ||
AAX87838.1 | 50S ribosomal protein L5, RplN | 0.74 | Cytoplasmic | ||
AAX88285.1 | arginyl-tRNA synthetase, ArgS | 0.74 | Cytoplasmic | ||
AAX87448.1 | predicted GTPase, probable translation factor | 0.74 | Cytoplasmic | ||
AAX87662.1 | elongation factor Tu, TufB | 0.80 | 0.81 | Cytoplasmic | |
AAX88543.1 | valyl-tRNA synthetase, ValS | 0.83 | Cytoplasmic | ||
AAX87376.1 | aspartyl-tRNA synthetase, AspS | 0.85 | Cytoplasmic | ||
Purines, pyrimidines, nucleosides, and nucleotides processes | |||||
AAX87406.1 | adenylate kinase, Adk | 0.55 | 0.66 | Cytoplasmic | |
AAX88253.1 | Ribose-phosphate pyrophosphokinase, PrsA | 0.57 | 0.80 | Cytoplasmic | |
AAX87655.1 | 2’,3’-cyclic-nucleotide 2’-phosphodiesterase, CpdB | 0.78 | 0.61 | Periplasmic | |
AAX88085.1 | CTP synthase, PyrG | 0.62 | Cytoplasmic | ||
AAX87567.1 | Purine nucleoside phosphorylase, DeoD | 0.65 | Cytoplasmic | ||
AAX87928.1 | Serine hydroxymethyltransferase, GlyA | 0.75 | Cytoplasmic | ||
Regulatory functions | |||||
AAX87211.1 | HflK | 1.36 | Cytoplasmic | ||
AAX87210.1 | HflC | 1.22 | Cytoplasmic | ||
AAX87923.1 | aerobic respiration control protein ArcA | 0.37 | 0.35 | Cytoplasmic | |
Transcription | |||||
AAX88453.1 | transcription elongation factor GreA | 1.60 | Cytoplasmic | ||
AAX88611.1 | transcription elongation protein NusA | 1.44 | Cytoplasmic | ||
AAX87564.1 | DNA-directed RNA polymerase beta chain, RpoB | 1.17 | 1.32 | Cytoplasmic | |
AAX87290.1 | polyribonucleotide nucleotidyltransferase, Pnp | 1.17 | 1.18 | Cytoplasmic | |
AAX87467.1 | ribonuclease E, Rne | 1.14 | Cytoplasmic | ||
AAX87292.1 | Cold-shock DEAD-box protein A homolog, DeaD | 0.52 | Cytoplasmic | ||
Transport and binding proteins | |||||
AAX88593.1 | spermidine/putrescine-binding periplasmic protein 1 precursor, PotD1 | 2.04 | Periplasmic | ||
AAX88216.1 | putative L-lactate permease | 1.96 | 1.68 | Cyto. Memb. | |
AAX87899.1 | heme-binding protein A, HbpA | 1.73 | Periplasmic | ||
AAX87717.1 | glycerol-3-phosphate transporter, GlpT | 1.50 | Cyto. Memb. | ||
AAX87322.1 | heme/hemopexin-binding protein B, HxuB | 1.45 | OMP | ||
AAX88215.1 | heme utilization protein, Hup | 1.37 | OMP | ||
AAX88590.1 | spermidine/putrescine transport ATP-binding protein, PotA | 1.34 | Cyto. Memb. | ||
AAX87417.1 | putative periplasmic chelated iron binding protein, HfeA | 1.31 | Periplasmic | ||
AAX88729.1 | predicted regulator of cell morphogenesis and NO signaling | 0.77 | 0.39 | Cytoplasmic | |
AAX88749.1 | molybdate-binding periplasmic protein, ModA | 0.46 | 0.69 | Periplasmic | |
AAX87869.1 | D-galactose-binding periplasmic protein precursor, MglB | 0.64 | 0.59 | Periplasmic | |
AAX88127.1 | periplasmic oligopeptide-binding protein, OppA | 0.71 | 0.61 | Periplasmic | |
AAX87555.1 | Ribose-binding periplasmic protein, RbsB | 0.68 | Periplasmic | ||
AAX88552.1 | phosphate-binding periplasmic protein precursor PstS | 0.72 | 0.70 | Periplasmic | |
AAX88551.1 | ferritin like protein 1, FtnA | 0.77 | Cytoplasmic | ||
AAX87184.1 | high-affinity zinc uptake system protein ZnuA | 0.77 | Periplasmic | ||
AAX87223.1 | Na(+)-translocating NADH-quinone reductase subunit A, NqrA | 0.84 | Cytoplasmic |