From: Hepatitis A virus subgenotyping based on RT-qPCR assays
Serum | Age/Sex | Transaminases IU/mL | Travel | Genotype by sequencing | HAV genome copies/μl of serum | Difference of quantification between 5’UTR and subtype assays (log10) | Difference of quantification between IA and IB subtype assays (log10) | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
5’UTR | IA | IB | IIA | IIB | IIIA | IIIB | |||||||
1310074855 | 61-70/F | 3935 | Ethiopia | IB | 1.50 x108 | - | 2.87 x108 | - | - | - | - | IB : –0.28 | - |
1310016965 | 11-20/M | 400 | NC | IB | 3.13 x105 | - | 4.18 x103 | - | - | - | - | IB : +1.87 | - |
1311012387 | 1-10/F | NC | NC | IA | 6.37 x104 | 9.26 x104 | - | - | - | - | - | IA : −0.16 | - |
1311018436 | 1-10/M | NC | NC | IA | 2.86 x104 | 3.60 x104 | - | - | - | - | - | IA : −0.10 | - |
1311072234 | 31-40/F | 2018 | NC | IA | 7.36 x104 | 7.31 x104 | 8.58 x103 | - | - | - | - | IA : 0 ; IB : +0.93 | –0.93 |
1310064958 | 61-70/M | 2314 | Guadeloupe | IA | 4.73 x105 | 5.50 x105 | - | - | - | - | - | IA : −0.07 | - |
1311009716 | 51-60/M | 2339 | NC | IB | 1.70 x106 | - | 2.30 x106 | - | - | - | - | IB : −0.13 | - |
1311071503 | 1-10/M | 358 | NC | IA | 2.72 x105 | 2.85 x106 | 3.22 x104 | - | - | - | - | IA : −1.02 ; IB : +0.93 | −1.95 |
1310024892 | 1-10/M | NC | Morocco | IA | 6.14 x106 | 6.47 x106 | - | - | - | - | - | IA : −0.02 | - |
1310066012 | 1-10/F | 1113 | Morocco | IA | 2.04 x103 | 2.48 x103 | - | - | - | - | - | IA : −0.09 | - |
1309036458 | 11-20/M | 3393 | Cameroun | IIA | 3.42 x105 | - | - | 4.66 x106 | - | - | - | IIA : −1.13 | - |
1309064503 | 1-10/F | 2470 | Algeria | IA | 3.27 x103 | 3.99 x103 | - | - | - | - | - | IA : −0.09 | - |
1309044888 | 11-20/M | 1352 | Guinea | IB | 4.10 x105 | - | 7.00 x105 | - | - | - | - | IB : −0.23 | - |
1310077770 | 31-40/M | NC | Ethiopia | IB | 1.48 x106 | - | 4.35 x106 | - | - | - | - | IB : −0.47 | - |
1310044717 | 51-60/F | 6500 | NC | IB | 7.16 x105 | - | 1.32 x106 | - | - | - | - | IB : −0.26 | - |
1311011402 | 1-10/M | 993 | Ethiopia | IB | 7.89 x105 | - | 1.38 x106 | - | - | - | - | IB : −0.24 | - |
1311018712 | 41-50/M | NC | Ethiopia | IB | 4.63 x103 | - | 1.22 x104 | - | - | - | - | IB : −0.42 | - |
1310005428 | 21-30/M | 3400 | Morocco | IA | 5.87 x103 | 1.52 x104 | 1.37 x102 | - | - | - | - | IA : −0.41 ; IB : +1.63 | –2.05 |
1311011353 | 41-50/F | 1736 | Ethiopie | IB | 4.43 x104 | - | 9.28 x104 | - | - | - | - | IB : −0.32 | - |
1310023611 | 21-30/F | 1388 | Tunisia | IA | 3.84 x104 | 2.09 x104 | 4.57 x103 | - | - | - | - | IA : +0.26 ; IB : +0.92 | −0.66 |
1380219001 | 51-60/M | 4000 | Madagascar | IIIA | 4.73 x105 | - | - | - | - | 3.10 x104 | - | IIIA : +1.18 | - |
1311018504 | 61-70/F | 1334 | NC | IB | 6.96 x104 | - | 2.09 x105 | - | - | - | - | IB : −0.48 | - |
1309047363 | 11-20/F | 2000 | NC | IB | 9.76 x104 | - | 1.30 x105 | - | - | - | - | IB : −0.12 | - |
1310011213 | 1-10/M | 1831 | Algeria | IA | 7.89 x104 | 6.68 x104 | 4.77 x103 | - | - | - | - | IA : +0.07 ; IB : +1.22 | −1.15 |
1309064723 | 11-20/F | 1494 | Morocco | IA | 3.22 x104 | 2.76 x104 | - | - | - | - | - | IA : +0.07 | - |
1309039311 | 1-10/M | NC | Guinea | IB | 1.25 x105 | - | 5.35 x105 | - | - | - | - | IB : −0.63 | - |
1310053557 | 21-30/M | 269 | NC | IA | 9.38 x101 | 6.33 x102 | - | - | - | - | - | IA : −0.83 | - |
1310078280 | 1-10/F | 857 | Tunisia | IA | 6.06 x104 | 3.41 x104 | - | - | - | - | - | IA : +0.25 | - |
1380311211 | 61-70/M | 1269 | Madagascar | IIIA | 1.48 x104 | - | - | - | - | 4.25 x104 |  | IIIA : −0.46 | - |
1311062298 | 11-20/F | 940 | Morocco | IB | 2.95 x102 | 2.64 x102 | - | - | - | - | - | IA : +0.05 | - |