From: Hepatitis A virus subgenotyping based on RT-qPCR assays
Stool | Age/Sex | Transaminases IU/mL | Travel | Genotype by sequencing | HAV genome copies/g of stool | Difference of quantification between 5’UTR and subtype RT-qPCR assays (log10) | Difference of quantification between IA and IIA subtype RT-qPCR assays (log10) | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
5’UTR | IA | IB | IIA | IIB | IIIA | IIIB | |||||||
0780627147 | 21-30/M | NC | none | IA | 2.30 x107 | 1.93 x108 | - | - | - | - | - | IA : −0.92 | - |
1280210015 | 51-60/F | 5680 | Senegal | IB | 1.50 x1010 | - | 7.19 x1010 | - | - | - | - | IB : −0.68 | - |
1280514230 | 51-60/F | 7191 | Benin | IB | 6.85 x1010 | - | 6.37 x1010 | - | - | - | - | IB : +0.03 | - |
1181216151 | 51-60/F | 3623 | none | IA | 7.75 x1011 | 5.75 x1011 | - | 3.85 x106 | - | - | - | IA : +0.13 ; IIA : +5.30 | −5.17 |
078014121 | 51-60/F | NC | Morocco | IB | 1.12 x107 | - | 3.73 x105 | - | - | - | - | IB : +1.48 | - |