From: Hepatitis A virus subgenotyping based on RT-qPCR assays
Genotype | Reference strain | Â | Sequence | Position |
---|---|---|---|---|
HAV IA | AB020564.1 | Forward primer | GCA TTT AGG TTT TTC CTC ATT | 702-722 |
Reverse primer | TCA ACK GAC TGA ATC ATT | 837-820 | ||
Probe | TCC AAA CAA GGA ATT TTC CAG AC | 743-765 | ||
HAV IB | M14707 | Forward primer | AAG CTT ATT GTG TAY TGT TAT | 2070-2090 |
Reverse primer | CAG AAT CAT CTC CAA CYT | 2223-2208 | ||
Probe | TTC TCC TTC TAA C GT TGC TTC CCA | 2103-2125 | ||
HAV IIA | AY644676.1 | Forward primer | ACY ATG ATG AGC AGA ATT G | 2978-2996 |
Reverse primer | GCA TAT TTT AAT CTC TGC TT | 3129-3110 | ||
Probe | AGA CCT GGA ATC G TC AGT GGA TGA | 3004-3027 | ||
HAV IIB | AY644670.1 | Forward primer | GGA GAT TTG AAA GTC ATA TTG | 3047-3067 |
Reverse primer | TTC CTG GGC ATA CTT TAG | 3135-3118 | ||
Probe | AGT CTT AAT TCT TTG TAT GGT TTTC | 3078-3094 | ||
HAV IIIA | AB279732.1 | Forward primer | TCC CTT GGA TTT GAC AAT | 2605-2622 |
Reverse primer | RGT ATT RAA CCT AAC AGC | 2763-2747 | ||
Probe | AAT TAT AAC TGG G GC TAC TGA TGT T | 2623-2647 | ||
HAV IIIB | AB279735.1 | Forward primer | AAT CCG ATG CTT CTC AAG | 1560-1577 |
Reverse primer | GCC TTC CTG AAT GGT ATT | 1841-1824 | ||
Probe | AAA ATT ACA CAC TTY ACA ACY TGG A | 1589-1613 | ||
HAV 5’UTR | M14707 | Forward primer* | TCA CCG CCG TTT GCC TAG | 68-85 |
Reverse primer* | GGA GAG CCC TGG AAG AAA G | 241-223 | ||
Probe* | CCT GAA CCT GCA GGA ATT AA | 169-150 |