From: Deep sequencing of HetR-bound DNA reveals novel HetR targets in Anabaenasp. strain PCC7120
Region location | RNA-seq RPKM fold changea | Gene function | Potential HetR binding site | ||||
---|---|---|---|---|---|---|---|
WT 0 h/ΔhetR0 h | WT 6 h/ΔhetR6 h | WT 0 h/WT 6 h | WT 0 h/WT 12 h | WT 0 h/WT 21 h |  |  | |
patA (all0521) | -13 | -8.0 | -1.8 | 1.6 | 1.4 | Pattern formation | TTGGCTCAAACCCAT |
asr1469 | -4.0b | 1.7b | --Low coverage-- | Small peptide | TTGGGTCTAACTTAT | ||
asl2028 | -2.5 | -1.5 | -3.7 | 1.2 | 1.4 | Unknown | TCGGGGTAACAATCC |
alr2242 | 1.3 | -13.4 | 1.5 | 1.1 | 2.7 | Possible NTPase | None found |
alr3758 | Low coverage | 11 / 0c | 12 | 3.9 | 7.7 | Anti sigma factor antagonist | TTGGGTAAACCTGCT |