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Table 1 Phage-related elements and genomic islands of P. fluorescens Pf-5 genome

From: Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5

Feature Gene range 5' end 3' end Size (bp) %GC Presence of integrase Type of feature
Prophage 01 PFL_1210 to PFL_1229 1386082 1402957 16875 62.6 No SfV-like prophage
Prophage 02 PFL_1842 to PFL_1846 2042157 2050549 8392 46.8 Yes* Defective prophage in tRNASer
Prophage 03 PFL_1976 to PFL_2019 2207060 2240619 33559 61.2 Yes P2-like prophage
Prophage 04 PFL_2119 to PFL_2127 2338296 2351794 13498 56.3 Yes Defective prophage in tRNAPro
Prophage 05 PFL_3464 to PFL_3456 3979487 3982086 2599 55.3 Yes* Defective prophage in tRNACys
Prophage 06 PFL_3739 to PFL_3780 4338335 4395005 56670 57.3 Yes Lambdoid prophage in tRNASer
Genomic island 1 (PFGI-1) PFL_4658 to PFL_4753 5378468 5493586 115118 56.4 Yes Putative mobile island PFGI-1 in tRNALys
Genomic island 2 (PFGI-2) PFL_4977 to PFL_4984 5728474 5745256 16782 51.5 Yes Genomic island in tRNALeu
  1. *, the predicted integrase gene contains frameshift mutation(s).