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Table 2 Microorganisms and genes used in this study.

From: Diversity and transcription of proteases involved in the maturation of hydrogenases in Nostoc punctiforme ATCC 29133 and Nostocsp. strain PCC 7120

Strain/Putative protease/Accession #

Abbreviationa

Proposed phylogenetic group

H2ase

Accession #

Ref.

Acetomicrobium flavidum/hydD/CAA56465

HydDAf

3d

   

Azoarcus sp. strain BH72/hupD/YP_935294

HupDABH72

1

  

[78]

Anabaena variabilis ATCC 29413/hoxW/YP_325157

HoxWAv29413

3d

   

Anabaena variabilis ATCC 29413/hupW/ABA23552

HupWAv29413

2

   

Desulfovibrio gigas/hynC/CAA11501

HynCDg

1

  

[84]

Desulfovibrio vulgaris strain Miyazaki F/hynC/AAY90127

HynCDv

1

hydB

P21852

[69]

Desulfovibrio vulgaris subsp. vulgaris DP4/Dvul_1244/YP_966690

DvDP41

1

   

Desulfovibrio vulgaris subsp. vulgaris DP4/Dvul_1247/YP_966693

DvDP42

1

   

Escherichia coli K12/hyaD/NP_415494

HyaDEc

1

  

[83]

Escherichia coli K12/hybD/NP_417467

HybDEc

1

hybC

NP_417468.1

[83]

Escherichia coli K12/hycI/NP_417197

HycIEc

4

  

[83]

Gloeothece sp. strain PCC 6909/hupW/AAS72556.1

HupWG6909

2

  

[44]

Lyngbya sp. strain PCC 8106/hoxW/ZP_01622075

HoxWL8106

3d

   

Lyngbya sp. strain PCC 8106/hupW/ZP_01619037

HupWL8106

2

   

Methanocaldococcus jannaschii DSM 2661/hycI/NP_247615

HycIMj

4

  

[70]

Methanocaldococcus jannaschii DSM 2661/frcD/NP_246993

FrcDAMj

3a

  

[70]

Methanocaldococcus jannaschii DSM 2661/MJ0253/NP_247224

FrcDBMj

3a

  

[70]

Methanococcus maripaludis S2/frcD/NP_987939

FrcDMm

3a

  

[74]

Methanococcus maripaludis S2/fruD/NP_988503

FruDMm

3a

  

[74]

Methanococcus maripaludis S2/HycI/NP_988305

HycIMm

4

  

[74]

Methanococcus maripaludis S2/MMP1337/NP_988457

MmS2

3a

  

[74]

Methanococcus voltae/frcD/CAA43497

FrcDMv

3a

  

[73]

Methanococcus voltae/fruD/CAA43501

FruDMv

3a

  

[73]

Methylococcus capsulatus strain Bath/hoxW/YP_112652

HoxWMcB

3d

  

[86]

Nitrosospira multiformis ATCC 25196/hoxW/YP_412365

HoxWNm25196

3d

   

Nodularia spumigena CCY9414/hupW/ZP_01628408

HupWNs9414

2

   

Nostoc punctiforme ATCC 29133/hupW/YP_001864099

HupWN29133

2

hupL

YP_001864094

[81]

Nostoc sp. strain PCC 7120/hoxW/NP_484813

HoxWN7120

3d

hoxH

BAB72723.1

[63]

Nostoc sp. strain PCC 7120/hupW/NP_485466

HupWN7120

2

hupL

BAB72634.1

[63]

Pyrococcus furiosus DSM 3638/hycI/AAL80741

HycIPf

4

  

[79]

Ralstonia eutropha H16/hoxM/AAP85761

HoxMReH16

1

  

[85]

Ralstonia eutropha H16/hoxW/CAA63575

HoxWReH16

3d

  

[85]

Ralstonia eutropha H16/PHG070/AAP85823

ReH16

-

  

[15]

Rhizobium leguminosarum bv. Viciae/hupD/P27649

HupDRl

1

  

[75]

Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67/hyaD/AAX65690

HyaDSe

1

  

[71]

Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67/hupD/AAX65459

HupDSe

1

  

[71]

Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67/hybD/AAX66993

HybDSe

1

  

[71]

Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67/hycI/AAX66684.1

HycISe

4

  

[71]

Shigella boydii Sb227/hyaD/ABB66821

HyaDSb

1

  

[87]

Shigella boydii Sb227/hybD/ABB67388

HybDSb

1

  

[87]

Shigella boydii Sb227/hycI/ABB67327

HycISb

4

  

[87]

Synechococcus sp. strain PCC 7002/hoxW/AAN03570.1

HoxWS7002

3d

   

Synechocystis sp. strain PCC 6803/hoxW/BAA17680.1

HoxWS6803

3d

  

[76, 77]

Thiocapsa roseopersicina/-/AY214929

HoxWTr

3d

  

[72]

Thiocapsa roseopersicina/hupD/Q56362

HupDTr

1

  

[80]

Thiocapsa roseopersicina/hydD-hynD/AAN87047.1

HynDTr

-

  

[82]

  1. aAs used in phylogenetic tree (Figure 1).
  2. Hydrogenases shown in the table do not represent the total number of hydrogenases in each organism.
  3. Abbreviations; H2ase; hydrogenase, ref: reference.