Table 4 Frequency of 57 shared spoligotypes (SITs) according to Brudey et al. [21], identified in 188 M. tuberculosis strains isolated with S315T mutation, from South America.

Beijing

1

3

2

2 (66.7)

Haarlem1

47

6

6

0

Haarlem3

50

19

16

6 (31.5)

Haarlem3

49

3

2

2 (66.7)

LAM1

20

9

4

7 (77.8)

LAM2

17

6

3

3 (50.0)

LAM3

33

8

4

4 (50.0)

LAM3/S convergent

4

3

2

2 (66.7)

LAM3

211

2

1

2 (100)

LAM4

828

3

3

0

LAM5

93

10

6

4 (40.0)

LAM6

64

9

6

2 (22.2)

LAM9

435

3

1

3 (100)

LAM9

177

3

3

0

LAM9

388

2

1

2 (100)

LAM9

42

22

12

14 (63.6)

S

1938

7

5

4 (57.0)

T1

53

17

11

4 (23.5)

U

397

3

2

2 (66.7)

U

402

2

2

0

U

1241

3

3

0

X1

119

3

3

0

X2

137

2

2

0

X3

92

3

2

2 (66.7)

X3

91

3

3

0

LAM4

60

2

2

0

U

602

2

2

0

T5-MAD2

58

1

Not done

Unique

LAM6

95

1

Not done

Unique

U (LAM3?)

106

1

Not done

Unique

T5

68

1

Not done

Unique

T3

157

1

Not done

Unique

T1

159

1

Not done

Unique

Haarlem3

207

1

Not done

Unique

T1

253

1

Not done

Unique

Beijing-Like

269

1

Not done

Unique

T1

353

1

Not done

Unique

T1

453

1

Not done

Unique

Haarlem3

631

1

Not done

Unique

S

707

1

Not done

Unique

S

827

1

Not done

Unique

LAM5-LAM6

867

1

Not done

Unique

X2

1341

1

Not done

Unique

T2

1355

1

Not done

Unique

LAM9

1535

1

Not done

Unique

LAM2

1691

1

Not done

Unique

LAM1

389

1

Not done

Unique

T1

276

1

Not done

Unique

Haarlem3

294

1

Not done

Unique

MANU2

1094

1

Not done

Unique

LAM5

176

1

Not done

Unique

T3

1655

1

Not done

Unique

LAM3

130

1

Not done

Unique

T4-CE1 ancestor?

65

1

Not done

Unique

Haarlem3-LAM9

335

1

Not done

Unique

T1

222

1

Not done

Unique

LAM3

1354

1

Not done

Unique