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Table 4 Frequency of 57 shared spoligotypes (SITs) according to Brudey et al. [21], identified in 188 M. tuberculosis strains isolated with S315T mutation, from South America.

From: Correlations of mutations in katG, oxyR-ahpC and inhA genes and in vitro susceptibility in Mycobacterium tuberculosisclinical strains segregated by spoligotype families from tuberculosis prevalent countries in South America

Lineage SIT Number of isolates Number of DRE-PCR patterns Number of isolates in cluster (%)
Beijing 1 3 2 2 (66.7)
Haarlem1 47 6 6 0
Haarlem3 50 19 16 6 (31.5)
Haarlem3 49 3 2 2 (66.7)
LAM1 20 9 4 7 (77.8)
LAM2 17 6 3 3 (50.0)
LAM3 33 8 4 4 (50.0)
LAM3/S convergent 4 3 2 2 (66.7)
LAM3 211 2 1 2 (100)
LAM4 828 3 3 0
LAM5 93 10 6 4 (40.0)
LAM6 64 9 6 2 (22.2)
LAM9 435 3 1 3 (100)
LAM9 177 3 3 0
LAM9 388 2 1 2 (100)
LAM9 42 22 12 14 (63.6)
S 1938 7 5 4 (57.0)
T1 53 17 11 4 (23.5)
U 397 3 2 2 (66.7)
U 402 2 2 0
U 1241 3 3 0
X1 119 3 3 0
X2 137 2 2 0
X3 92 3 2 2 (66.7)
X3 91 3 3 0
LAM4 60 2 2 0
U 602 2 2 0
T5-MAD2 58 1 Not done Unique
LAM6 95 1 Not done Unique
U (LAM3?) 106 1 Not done Unique
T5 68 1 Not done Unique
T3 157 1 Not done Unique
T1 159 1 Not done Unique
Haarlem3 207 1 Not done Unique
T1 253 1 Not done Unique
Beijing-Like 269 1 Not done Unique
T1 353 1 Not done Unique
T1 453 1 Not done Unique
Haarlem3 631 1 Not done Unique
S 707 1 Not done Unique
S 827 1 Not done Unique
LAM5-LAM6 867 1 Not done Unique
X2 1341 1 Not done Unique
T2 1355 1 Not done Unique
LAM9 1535 1 Not done Unique
LAM2 1691 1 Not done Unique
LAM1 389 1 Not done Unique
T1 276 1 Not done Unique
Haarlem3 294 1 Not done Unique
MANU2 1094 1 Not done Unique
LAM5 176 1 Not done Unique
T3 1655 1 Not done Unique
LAM3 130 1 Not done Unique
T4-CE1 ancestor? 65 1 Not done Unique
Haarlem3-LAM9 335 1 Not done Unique
T1 222 1 Not done Unique
LAM3 1354 1 Not done Unique