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Table 2 Putative CcpA binding sites in promoter regions of genes encoded by S. agalactiae NEM316 genome.

From: Analysis of growth-phase regulated genes in Streptococcus agalactiaeby global transcript profiling

Match Start (nt) End (nt) Homology with consensus(%) ORF number Name Putative function
TGACAACGGTAAAA 16111 16124 92 gbsr001   16S ribosomal RNA
TGAAAACGCTTTAA 48894 48907 92 gbs0032   N-acetylmannosamine-6-phosphate 2-epimerase
TGACAAGGATGTCA 65156 65169 92 gbs0049 ruvB Holliday junction DNA helicase ruvB
TTAAAGCGCTTTCA 69320 69333 92 gbs0053 adh2 Alcohol dehydrogenase
TGTAAACGATTACA 72238 72251 100 gbs0054 adhA Alcohol dehydrogenase
TGGGAACGGTTTCA 130310 130323 92 gbs0119   ABC transporter permease protein
TGTAATCGCTTACT 130334 130347 92 gbs0119   ABC transporter permease protein
TATTAACGTTAACA 142634 142647 92 gbs0130   Membrane protease protein family
TGTCAACTATATCA 176297 176310 92 gbs0155   Multimodular transpeptidase-transglycosylase PBP 1B
TGTAATCGTTTACA 209972 209985 100 gbs0189   PTS system, trehalose-specific IIBC component
TGTAAACGGTTACT 214120 214133 92 gbs0191   Transcription antiterminator, BglG family
TGAAAAAGGTAACA 243786 243799 92 gbs0227   pseudogene
TGTTACCGTTTTCA 284183 284196 100 gbs0266   NADH peroxidase
TGAAAGCGGTTATA 349577 349590 92 gbs0326   Ribosome-associated factor Y
AGAAAGCGTTAACA 349601 349614 92 gbs0326   Ribosome-associated factor Y
TTAAAACGTTTTCA 375767 375780 92 gbs0348 manL PTS system, mannose-specific IIAB component
TGATACCGTTCACT 480733 480746 92 gbs0452   alpha-L-Rha alpha-1,3-L-rhamnosyltransferase
TAATAACGTTAACA 515726 515739 92 gbs0493   Hypothetical protein
TGAAAACATTTACA 540267 540280 92 gbs0520 typA GTP-binding protein TypA BipA
TGACACCGTTTTCA 592276 592289 100 gbs0569   Acetoin dehydrogenase
AGATAGCGGTCACA 608177 608190 92 gbs0583   Adenosine deaminase
TGATATCGCTTTCA 638255 638268 100 gbs0615   Class B acid phosphatase
TGAAAGTGTTGACA 661185 661198 92 gbs0644 cylX Hypothetical protein
TAAAAGCGTTTACA 684988 685001 92 gbs0669   SUGAR SODIUM SYMPORTER
AGATAACGGTTACA 690270 690283 92 gbs0673   4-Hydroxy-2-oxoglutarate aldolase
TAAAAACGCTAACA 837159 837172 92 gbs0813   Glycerate kinase
TTAGAGCGTTTTCA 870536 870549 92 gbs0844 udk Uridine kinase
TGTAAGCCTTGTCA 879217 879230 92 gbs0852   Hypothetical protein
TGTAAACCATCTCA 903332 903345 92 gbs0875 atpE ATP synthase C chain
TGAAAACGTAATCA 903356 903369 92 gbs0875 atpE ATP synthase C chain
TGTTAACGCTATTA 913902 913915 92 gbs0887 pheT Acetyltransferase, GNAT family
TGAAAACCGTTTCA 981187 981200 92 gbs0940   16S rRNA m(2)G 1207 methyltransferase
TGAAAGCGTTTATA 1145634 1145647 92 gbs1100 pgmA Phosphoglucomutase
AGAAAACGGTATCA 1157589 1157602 92 gbs1112 apbE Iron-sulfur cluster assembly repair protein ApbE
TAATACCGTTATCA 1200221 1200234 92 gbs1156   Na+ driven multidrug efflux pump
TGAAATCGATTACA 1235422 1235435 100 gbs1192 gabD Succinate-semialdehyde dehydrogenase [NADP+]
TGTAAAGGTTTTCA 1237447 1237460 92 gbs1195 ska streptokinase
TGTAAACGTTTTTA 1248933 1248946 92 gbs1200   Hydrolase (HAD superfamily)
TTTAAACGCTATCA 1314589 1314602 92 gbs1273 rmlA Glucose-1-phosphate thymidylyltransferase
TGAAACCGGTTTGA 1337103 1337116 92 gbs1293   glycerophosphoryl diester phosphodiesterase
TGAAAGCTCTGACA 1489796 1489809 92 gbs1437   Transcriptional regulators, LysR family
TGACAGCGCAATCA 1492240 1492253 92 gbs1441 capA Capsule biosynthesis protein capA
TGTAACCGTTTTTA 1518448 1518461 92 gbs1468 pflC Pyruvate formate-lyase activating enzyme
TGTAACCGCTTTCT 1742894 1742907 92 gbs1684   Zn-dependent alcohol dehydrogenase
TGTACACGATATCA 1749143 1749156 92 gbs1689   ABC transporter substrate-binding protein
TGAAAACCCTAACA 1752507 1752520 92 gbs1694   Dihydroxyacetone kinase
TGACAACGTTAAAA 1824783 1824796 92 gbs1764 mutS2 DNA mismatch repair protein mutS
TGTAAGCGTTTTAA 1920050 1920063 92 gbs1856 ulaA PTS system, 3-keto-L-gulonate specific IIC component
TGACACCGGTATAA 1925222 1925235 92 gbs1862   Amino acid ligase family protein
TTATACCGTTTTCA 1929838 1929851 92 gbs1865 hslO 33 kDa chaperonin
TGTAAACGTTTTTA 1939040 1939053 92 gbs1874 ahpC Peroxiredoxin
TGTAATCTCTTACA 1946899 1946912 92 gbs1875 ahpF Peroxiredoxin reductase (NAD(P)H)
TTATAGCGCTTTCA 1957716 1957729 92 gbs1879 pepO Oligoendopeptidase O
TGATAACTATGTCA 1990172 1990185 92 gbs1918 lacA.1 Galactose-6-phosphate isomerase lacA subunit
TGAAAGCGGTTTAA 2014283 2014296 92 gbs1939   PTS system, mannose fructose family IIA component
TGTAAACGCTTTTA 2101628 2101641 92 gbs2026 udp Uridine phosphorylase
TGATATCGTAATCA 2130043 2130056 92 gbs2055 argR2 Arginine repressor, argR
AGATATCGCTTTCA 2157836 2157849 92 gbs2085   Ornithine carbamoyltransferase
AGAAATCGCTTTCA 2195324 2195337 92 gbs2122 arcA Arginine deiminase
  1. Genome was searched using BLAST algorithm (CLC DNA Workbench 4) with cre consensus sequence: TGWNANCGNTNWCA (N any nucleotide, W indicates adenine or thymine) and accuracy 90%. Start/End coordinates according to genome sequence