Table 2 Putative CcpA binding sites in promoter regions of genes encoded by S. agalactiae NEM316 genome.
From: Analysis of growth-phase regulated genes in Streptococcus agalactiaeby global transcript profiling
Match | Start (nt) | End (nt) | Homology with consensus(%) | ORF number | Name | Putative function |
|---|---|---|---|---|---|---|
TGACAACGGTAAAA | 16111 | 16124 | 92 | gbsr001 | Â | 16S ribosomal RNA |
TGAAAACGCTTTAA | 48894 | 48907 | 92 | gbs0032 | Â | N-acetylmannosamine-6-phosphate 2-epimerase |
TGACAAGGATGTCA | 65156 | 65169 | 92 | gbs0049 | ruvB | Holliday junction DNA helicase ruvB |
TTAAAGCGCTTTCA | 69320 | 69333 | 92 | gbs0053 | adh2 | Alcohol dehydrogenase |
TGTAAACGATTACA | 72238 | 72251 | 100 | gbs0054 | adhA | Alcohol dehydrogenase |
TGGGAACGGTTTCA | 130310 | 130323 | 92 | gbs0119 | Â | ABC transporter permease protein |
TGTAATCGCTTACT | 130334 | 130347 | 92 | gbs0119 | Â | ABC transporter permease protein |
TATTAACGTTAACA | 142634 | 142647 | 92 | gbs0130 | Â | Membrane protease protein family |
TGTCAACTATATCA | 176297 | 176310 | 92 | gbs0155 | Â | Multimodular transpeptidase-transglycosylase PBP 1B |
TGTAATCGTTTACA | 209972 | 209985 | 100 | gbs0189 | Â | PTS system, trehalose-specific IIBC component |
TGTAAACGGTTACT | 214120 | 214133 | 92 | gbs0191 | Â | Transcription antiterminator, BglG family |
TGAAAAAGGTAACA | 243786 | 243799 | 92 | gbs0227 | Â | pseudogene |
TGTTACCGTTTTCA | 284183 | 284196 | 100 | gbs0266 | Â | NADH peroxidase |
TGAAAGCGGTTATA | 349577 | 349590 | 92 | gbs0326 | Â | Ribosome-associated factor Y |
AGAAAGCGTTAACA | 349601 | 349614 | 92 | gbs0326 | Â | Ribosome-associated factor Y |
TTAAAACGTTTTCA | 375767 | 375780 | 92 | gbs0348 | manL | PTS system, mannose-specific IIAB component |
TGATACCGTTCACT | 480733 | 480746 | 92 | gbs0452 | Â | alpha-L-Rha alpha-1,3-L-rhamnosyltransferase |
TAATAACGTTAACA | 515726 | 515739 | 92 | gbs0493 | Â | Hypothetical protein |
TGAAAACATTTACA | 540267 | 540280 | 92 | gbs0520 | typA | GTP-binding protein TypA BipA |
TGACACCGTTTTCA | 592276 | 592289 | 100 | gbs0569 | Â | Acetoin dehydrogenase |
AGATAGCGGTCACA | 608177 | 608190 | 92 | gbs0583 | Â | Adenosine deaminase |
TGATATCGCTTTCA | 638255 | 638268 | 100 | gbs0615 | Â | Class B acid phosphatase |
TGAAAGTGTTGACA | 661185 | 661198 | 92 | gbs0644 | cylX | Hypothetical protein |
TAAAAGCGTTTACA | 684988 | 685001 | 92 | gbs0669 | Â | SUGAR SODIUM SYMPORTER |
AGATAACGGTTACA | 690270 | 690283 | 92 | gbs0673 | Â | 4-Hydroxy-2-oxoglutarate aldolase |
TAAAAACGCTAACA | 837159 | 837172 | 92 | gbs0813 | Â | Glycerate kinase |
TTAGAGCGTTTTCA | 870536 | 870549 | 92 | gbs0844 | udk | Uridine kinase |
TGTAAGCCTTGTCA | 879217 | 879230 | 92 | gbs0852 | Â | Hypothetical protein |
TGTAAACCATCTCA | 903332 | 903345 | 92 | gbs0875 | atpE | ATP synthase C chain |
TGAAAACGTAATCA | 903356 | 903369 | 92 | gbs0875 | atpE | ATP synthase C chain |
TGTTAACGCTATTA | 913902 | 913915 | 92 | gbs0887 | pheT | Acetyltransferase, GNAT family |
TGAAAACCGTTTCA | 981187 | 981200 | 92 | gbs0940 | Â | 16S rRNA m(2)G 1207 methyltransferase |
TGAAAGCGTTTATA | 1145634 | 1145647 | 92 | gbs1100 | pgmA | Phosphoglucomutase |
AGAAAACGGTATCA | 1157589 | 1157602 | 92 | gbs1112 | apbE | Iron-sulfur cluster assembly repair protein ApbE |
TAATACCGTTATCA | 1200221 | 1200234 | 92 | gbs1156 | Â | Na+ driven multidrug efflux pump |
TGAAATCGATTACA | 1235422 | 1235435 | 100 | gbs1192 | gabD | Succinate-semialdehyde dehydrogenase [NADP+] |
TGTAAAGGTTTTCA | 1237447 | 1237460 | 92 | gbs1195 | ska | streptokinase |
TGTAAACGTTTTTA | 1248933 | 1248946 | 92 | gbs1200 | Â | Hydrolase (HAD superfamily) |
TTTAAACGCTATCA | 1314589 | 1314602 | 92 | gbs1273 | rmlA | Glucose-1-phosphate thymidylyltransferase |
TGAAACCGGTTTGA | 1337103 | 1337116 | 92 | gbs1293 | Â | glycerophosphoryl diester phosphodiesterase |
TGAAAGCTCTGACA | 1489796 | 1489809 | 92 | gbs1437 | Â | Transcriptional regulators, LysR family |
TGACAGCGCAATCA | 1492240 | 1492253 | 92 | gbs1441 | capA | Capsule biosynthesis protein capA |
TGTAACCGTTTTTA | 1518448 | 1518461 | 92 | gbs1468 | pflC | Pyruvate formate-lyase activating enzyme |
TGTAACCGCTTTCT | 1742894 | 1742907 | 92 | gbs1684 | Â | Zn-dependent alcohol dehydrogenase |
TGTACACGATATCA | 1749143 | 1749156 | 92 | gbs1689 | Â | ABC transporter substrate-binding protein |
TGAAAACCCTAACA | 1752507 | 1752520 | 92 | gbs1694 | Â | Dihydroxyacetone kinase |
TGACAACGTTAAAA | 1824783 | 1824796 | 92 | gbs1764 | mutS2 | DNA mismatch repair protein mutS |
TGTAAGCGTTTTAA | 1920050 | 1920063 | 92 | gbs1856 | ulaA | PTS system, 3-keto-L-gulonate specific IIC component |
TGACACCGGTATAA | 1925222 | 1925235 | 92 | gbs1862 | Â | Amino acid ligase family protein |
TTATACCGTTTTCA | 1929838 | 1929851 | 92 | gbs1865 | hslO | 33 kDa chaperonin |
TGTAAACGTTTTTA | 1939040 | 1939053 | 92 | gbs1874 | ahpC | Peroxiredoxin |
TGTAATCTCTTACA | 1946899 | 1946912 | 92 | gbs1875 | ahpF | Peroxiredoxin reductase (NAD(P)H) |
TTATAGCGCTTTCA | 1957716 | 1957729 | 92 | gbs1879 | pepO | Oligoendopeptidase O |
TGATAACTATGTCA | 1990172 | 1990185 | 92 | gbs1918 | lacA.1 | Galactose-6-phosphate isomerase lacA subunit |
TGAAAGCGGTTTAA | 2014283 | 2014296 | 92 | gbs1939 | Â | PTS system, mannose fructose family IIA component |
TGTAAACGCTTTTA | 2101628 | 2101641 | 92 | gbs2026 | udp | Uridine phosphorylase |
TGATATCGTAATCA | 2130043 | 2130056 | 92 | gbs2055 | argR2 | Arginine repressor, argR |
AGATATCGCTTTCA | 2157836 | 2157849 | 92 | gbs2085 | Â | Ornithine carbamoyltransferase |
AGAAATCGCTTTCA | 2195324 | 2195337 | 92 | gbs2122 | arcA | Arginine deiminase |