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Table 4 Comparison of results for selected up-regulated genes determined by Affymetrix/S score and RQ-PCR.

From: Induction of a chemoattractant transcriptional response by a Campylobacter jejuniboiled cell extract in colonocytes

Gene Description Ingenuty Name Affymetrix Probe Set S Score Fold RQ-PCR Network Location
Interleukin-8 IL8 211506_s_at 11.393 59.4 ± 15.5 See Figure 3 Extra-cellular
ATPase, Na+/K+ transporting, Beta 1 polypeptide ATP1B1 201242_s_at 7.184 4.5 ± 1.8 10 Plasma Membrane
Syndecan 4 SDC4 202071_at 8.823 4.0 ± 0.84 5 Plasma Membrane
Retinoic acid receptor responder (tazarotene induced) 1 RARRES1 221872_at 6.179 2.4± 0.7 8 Plasma Membrane
tumor necrosis factor, alpha-induced protein 3 TNIP1 207196_s_at 9.344 2.0 ± 0.2 See Figure 3 Nucleus
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha NFKBIA 201502_s_at 10.956 4.0 ± 1.2. See Figure 3 Cytoplasm
Matrix Metallo-peptidase 7 MMP7 202644_s_at 9.812 2.1 ± 4.2 9 & See Additional file 3 Extra-cellular
  1. For each gene ingenuity description, name and Affymetrix probe set, assigned network and cellular location are shown together with the S score and fold RQ-PCR change compared to β-actin control.