Induction of a chemoattractant transcriptional response by a Campylobacter jejuniboiled cell extract in colonocytes

Table 4 Comparison of results for selected up-regulated genes determined by Affymetrix/S score and RQ-PCR.

Gene Description	Ingenuty Name	Affymetrix Probe Set	S Score	Fold RQ-PCR	Network	Location
Interleukin-8	IL8	211506_s_at	11.393	59.4 ± 15.5	See Figure 3	Extra-cellular
ATPase, Na+/K+ transporting, Beta 1 polypeptide	ATP1B1	201242_s_at	7.184	4.5 ± 1.8	10	Plasma Membrane
Syndecan 4	SDC4	202071_at	8.823	4.0 ± 0.84	5	Plasma Membrane
Retinoic acid receptor responder (tazarotene induced) 1	RARRES1	221872_at	6.179	2.4± 0.7	8	Plasma Membrane
tumor necrosis factor, alpha-induced protein 3	TNIP1	207196_s_at	9.344	2.0 ± 0.2	See Figure 3	Nucleus
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	NFKBIA	201502_s_at	10.956	4.0 ± 1.2.	See Figure 3	Cytoplasm
Matrix Metallo-peptidase 7	MMP7	202644_s_at	9.812	2.1 ± 4.2	9 & See Additional file 3	Extra-cellular

For each gene ingenuity description, name and Affymetrix probe set, assigned network and cellular location are shown together with the S score and fold RQ-PCR change compared to β-actin control.

ISSN: 1471-2180