Figure 2

Recombination plots of structural gene regions from MEX_OAX_1038_05 and MEX_OAX_1656_05 sequences. A) BOOTSCAN plot analysis of the C₍₉₁₎-prM-E-NS1₍₂₄₀₀₎ gene sequences from the MEX_OAX_1038_05 isolate and the parental strains INDI_GWL102_01 and MEX_OAX_1656_05_C241. The first breakpoint is located in the nucleotide 499, the second breakpoint is located in the nucleotide 868 and the third breakpoint is located in the nucleotide 2239; B) BOOTSCAN plot analysis of the C₍₉₁₎-prM-E-NS1₍₂₄₀₀₎ gene sequences from the MEX_OAX_1656_05 isolate and the parental strains INDI_GWL102_01 and MEX_OAX_1656_05_C241. The first breakpoint is located in the nucleotide 512; the second breakpoint is located in the nucleotide 826 and the third breakpoint is located in the nucleotide 2239; C) The breakpoint plots of sequences of isolates MEX_OAX_1038_05 and MEX_OAX_1656_05 determined by GARD displayed the first breakpoint in the nucleotide 498, the second breakpoint in the nucleotide 828nt and the third breakpoint in the nucleotide 2226; D) Representation of recombinant regions in the genome of DENV. The nucleotide number is determined for the first nucleotide of our sequence corresponding to the nucleotide 91 starting with the coding region in the C gene.