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Table 2 Relative abundance (%) of bacterial species within samples collected in the shelf life trials using 16S rRNA clone analysis.

From: Bacterial composition and succession during storage of North-Atlantic cod (Gadus morhua)at superchilled temperatures

Bacterial species/group (accession)

Air

MAP

 

d0

d6

d13

d15

d7

d13

d21

d28

 

-

0°C

-2°C

-2°C

0°C

-2°C

-4°C

-2°C

-4°C

0°C

-2°C

-4°C

-4°C

-2°C

0°C

-4°C

-2°C

-2°C

-4°C

 

-

LS

LS

HS

LS

LS

LS

HS

HS

LS

LS

LS

HS

HS

LS

LS

HS

LS

HS

Photobacterium phosphoreum (DQ099331)

-

91

61

60

95

93

83

88

7

97

100

100

53

100

100

100

95

100

91

Photobacterium indicum (AY771742)

-

-

-

-

-

-

-

-

79

-

-

-

-

-

-

-

-

-

-

Photobacterium profundum (CR378665)

-

-

-

-

-

-

2

-

-

-

-

-

-

-

-

-

-

-

-

Sphingomonas spp. (EF462462)

42

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

Bradyrhizobium spp. (AB291825)

9

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

Pseudomonas spp. (various accession)1

2

2

-

-

5

-

10

-

-

-

-

-

3

-

-

-

-

-

-

Pseudomonas fluorescens (EF424136)

36

2

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

Pseudomonas tolaasii (EF111117)

-

-

5

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

Acinetobacter spp. (AF500327)

-

2

2

-

-

2

-

-

-

-

-

-

5

-

-

-

-

-

-

Variovorax sp. (EF471221)

11

-

 

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

Janthinobacterium lividum (EF204211)

-

-

11

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

2

Psychrobacter spp. (AM491457)

-

-

20

2

-

-

-

-

2

-

-

-

-

-

-

-

-

-

-

Psychrobacter arcticus (CP000082)

-

-

-

-

-

-

2

-

-

-

-

-

-

-

-

-

-

-

-

Vibrio logei (AY771721)

-

-

-

18

-

-

2

12

-

-

-

-

-

-

-

-

2

-

-

Moritella spp. (various accession)2

-

-

-

2

-

-

-

-

5

-

-

-

-

-

-

-

-

-

-

Moritella marina (AB038033)

-

-

-

11

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

Shewanella spp. (AB183502)

-

-

-

4

-

2

-

-

2

-

-

-

3

-

-

-

2

-

-

Shewanella benthica (AB008796)

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

4

Pseudoalteromonas spp. (EF156750)

-

-

-

2

-

2

-

-

5

-

-

-

-

-

-

-

-

-

-

Uncultured bacterium (EF378155)

-

2

-

-

-

-

-

-

-

3

-

-

-

-

-

-

-

-

-

Chryseobacterium spp. (AY536547)

-

-

-

-

-

-

-

-

-

-

-

-

20

-

-

-

-

-

-

Flavobacterium sp. (various accession)3

-

-

-

-

-

-

-

-

-

-

-

-

10

-

-

-

-

-

2

Acidovorax spp. (AM286541)

-

-

-

-

-

-

-

-

-

-

-

-

3

-

-

-

-

-

-

Uncultured alpha proteobacterium (AB074649)

-

-

-

-

-

-

-

-

-

-

-

-

3

-

-

-

-

-

-

Massilia aurea (AM231588)

-

-

-

-

-

-

-

-

-

-

-

-

3

-

-

-

-

-

-

Total sequences analysed

45

46

44

45

42

45

42

41

42

39

42

47

40

37

46

42

42

48

46

Coverage (C)

98

91

98

93

100

93

93

100

95

97

100

100

88

100

100

100

95

100

96

  1. 1 Accession numbers of Pseudomonas spp. sequences: EF111250, AF451270, EF451774, DQ777728, EF076789, EF061900
  2. 2 Accession numbers of Moritella spp. sequences: EF192283, DQ492814, AB120661
  3. 3 Accession numbers of Flavobacterium spp. sequences: DQ857026, DQ640006, AM689970