Table 1 Nucleotide identity percentage cutoff values defining genotypes for 11 rotavirus gene segments [5].
From: RotaC: A web-based tool for the complete genome classification of group A rotaviruses
Gene product | Cutoff value (%) | Genotype (n)a | Description of gene product |
|---|---|---|---|
VP7 | 80 | G (24) | Glycolylated |
VP4 | 80 | P (33) | Protease sensitive |
VP6 | 85 | I (14) | Intermediate capsid shell |
VP1 | 83 | R (6) | RNA-dependent RNA polymerase |
VP2 | 84 | C (6) | Core shell protein |
VP3 | 81 | M (7) | Methyltransferase |
NSP1 | 79 | A (16) | Interferon antagonist |
NSP2 | 85 | N (6) | NTPase |
NSP3 | 85 | T (8) | Translation enhancer |
NSP4 | 85 | E (12) | Enterotoxin |
NSP5 | 91 | H (8) | Phosphoprotein |