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Table 1 Summary of transcriptional changes in B. cereus ATCC14579 upon 0.5 μg/ml AS-48 treatment

From: Response of Bacillus cereus ATCC 14579 to challenges with sublethal concentrations of enterocin AS-48

Locus tag

Expression ratioa

Significance (p-value)b

Annotationc

Featured

Upregulated

BC4206

8.7

< 10-14

PadR-like transcriptional regulator

PR

BC4207

8.7

< 10 -14

Hypothetical protein

TMS(4)

BC4027

4.7

< 10 -14

NADH dehydrogenase subunit N

TMS(6)

BC2842

4.0

10 -12

Hypothetical protein

SS; TMS(2)

BC5438

3.7

10 -12

Antiholin-like protein

TMS(7)

BC1612

3.7

10 -13

Na+/H+ antiporter

SS; TMS (11)

BC2300

3.0

10 -11

Oxalate/formate antiporter

SS; TMS(11)

BC5439

2.7

10 -10

Murein hydrolase regulator

SS; TMS(4)

BC4528

2.4

10-11

Ferrichrome-binding protein

PPD

BC4028

2.4

10 -10

NADH dehydrogenase subunit N

TMS(6)

BC4268

2.4

10 -8

Phosphate transport system permease protein

TMS(6)

BC4269

2.3

10-9

Phosphate-binding protein

SS

BC4362

2.2

10 -7

Ferrichrome transport system permease protein

TMS(9)

BC0223

2.2

10 -9

Hypothetical protein

SS; TMS(1)

BC4029

2.2

10-11

PadR-like transcriptional regulator

PR

BC5100

2.1

10 -8

Hypothetical protein

SS; TMS(1)

BC0383

2.1

10-10

Ferrichrome-binding protein

SS, PPD

BC3540

2.1

10-9

BNR-repeat containing protein

 

BC3541

2.1

10-7

Flavodoxin

Flavodoxin

BC0227

2.0

10 -9

Hypothetical protein

TMS(1)

Downregulated

BC0409

0.3

10-12

Carbamate kinase

Kinase

BC0406

0.3

10-12

Arginine deiminase

Aminidotransferase

BC0407

0.3

10-12

Ornithine carbamoyltransferase

Carbamoyl-P binding domain; Asp/Orn binding domain

BC0408

0.3

10 -12

Arginine/ornithine antiporter

Permease; TMS(1)

  1. a The ratio of gene expression is shown. Ratio: expression in AS-48 treated sample over that in untreated samples.
  2. b Bayesian p value
  3. c Putative function of protein as annotated in the B. cereus ATCC14579 genome sequence
  4. d Domains detected using SMART search http://smart.embl-heidelberg.de/ (Letunic et al., 2006 Nucl Acid Res 34: D257-D260). PR; PadR domain; SS, signal sequence; TMS(n), transmembrane segment (n is the number of such domain); PPD, periplasm domain.
  5. Proteins with TMS are highlighted in bold