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Table 1 Bacterial Strains and Plasmids

From: Regulation of phenylacetic acid degradation genes of Burkholderia cenocepacia K56-2

Strain or plasmid

Features

Reference or source

B. cenocepacia strains

  

K56-2 (LMG18863)

ET12 clone related to J2315, CF clinical isolate

[43]

JNRH1

K56-2BCAL0210::pJH9, Tpr

This study

E. coli strains

  

DH5α

F-, ϕ 80 lac ZΔM15 endA1 recA1 hsdR 17(rK-mK+)supE 44 thi- 1 ΔgyrA 96 (ΔlacZYA-arg F)U169 relA 1

Invitrogen

SY327

araD Δ(lac pro) argE (Am) recA 56 Rifr nalA λ pir

[40]

Plasmids

  

pGPΩTp

ori r6K, ΩTpr mob+

[27]

pRK2013

oricolE1, RK2 derivative, Kmr mob+ tra+

[42]

pJH9

pGPΩTp, internal fragment from BCAL0210

This study

pJH1

pap20, eGFP

[9]

pJH2

pJH1, eGFP replaced promoter with multiple cloning site

This study

pJH5

pJH2, BCAL0211 promoter region (P BCAL0211 )

This study

pJH6

pJH2, paaZ promoter region (P paaZ )

This study

pJH7

pJH2, paaA promoter region (P paaA )

This study

pJH8

pJH2 paaH promoter region (P paaH )

This study

pJH10

pJH7, ACCGACCGGTCGGT → TAGATGTATCTCAG

This study

pJH11

pJH7, ACCGACCGGTCGGT → TAGATGTGGTCGGT

This study

pJH12

pJH7, ACCGACCGGTCGGT → ACCGACCATCTCAG

This study

  1. Cm, chloramphenicol; Km, kanamycin; Tp, trimethoprim. Arrows represent changes introduced to indicated sequences.