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Table 1 Combined PFGE, MIRU-VNTR and IS900-RFLP profiles by Map origin

From: Occurrence of Mycobacterium avium subspecies paratuberculosis across host species and European countries with evidence for transmission between wildlife and domestic ruminants

Profile    No of isolates Country1-Host2
PFGE3 MIRU-VNTR4 IS900-RFLP5   CZ ES FL GR NL NO SCO
[1-1] 1 C1 2 RD     G   
[1-1] 2 C1 7 C, RD C C(2)   C, RD   
[1-1] 2 C18 1    C     
[1-1] 2 C5 1      C   
[1-1] 6 C1 2      C(2)   
[2-1] 1 C1 13 C(4), FD, M C C(2)    G(3), S  
[2-1] 1 C9 1 H       
[2-1] 1 C17 39       C, S B, C(6), CR, F(2), H, R(13), RK, S(7), ST(3), W, WM
[2-1] 2 C17 2        C(2)
[2-1] 2 C1 9 C FD    C(2), G, S(4)   
[2-1] 2 C5 1      C   
[2-1] 2 C36 1      C   
[2-1] 5 C10 1 C       
[2-1] 19 C17 1        S
[2-1] 24 C1 1      S   
[2-1] 22 C38 1      G   
[2-1] 25 C17 1        R
[2-10] 1 C1 1       G  
[2-17] 2 C22 1      S   
[2-19] 2 C5 2     G, S    
[2-30] 1 C16 1      RD   
[2-30] 25 C16 1        W
[3-2] 1 C17 3        F, G, J
[5-2] 1 C17 1        S
[9-7] 21 S4 1        S
[15-16] 38 C1 1   G      
[15-25] 26 C1 7   G(7)      
[16-11] 20 I5 1   G      
[18-1] 13 C1 1   G      
[20-1] 1 C1 1 C       
[26-1] 35 C1 1 C       
[27-18] 2 C27 1   C      
[29-15] 36 C1 1     G    
[29-15] 37 C1 3     G(3)    
[30-21] 2 C1 1      G   
[31-17] 69 C39 1   G      
[32-29] 1 C17 1        ST
[34-22] 2 C1 2      RD(2)   
[34-22] 8 C1 1      RD   
[36-27] 1 C1 1 M       
[37-23] 29 I4 1 FD       
[40-28] 26 C1 1   G      
[41-1] 1 C9 1 C       
[58-64] 35 C1 1 M       
  1. 1. Country: CZ Czech Republic, ES Spain, FL Finland, GR Greece, NL The Netherlands, NO Norway, SCO Scotland
  2. 2. Host: B badger (Meles meles), C cow (Bos taurus), CR crow (Corvus corone), F fox (Vulpes vulpes), FD fallow deer (Dama dama), G goat (Capra hircus), H hare (Lepus europaeus), J jackdaw (Corvus monedula), M moufflon (Ovis musimon), R rabbit (Oryctolagus cuniculus), RD red deer (Cervus elaphus), RK rook (Corvus frugilegus), S sheep (Ovis aries), ST stoat (Mustela erminea), W weasel (Mustela nivalis), WM wood mouse (Apodemus sylvaticus). The number of isolates obtained from each host species within a country is given in parenthesis.
  3. 3. Nomenclature as defined by Stevenson et al. 2002 [11]
  4. 4. Nomenclature as defined by Thibault et al. 2007 [56]
  5. 5. Nomenclature as defined by Pavlik et al. 1999 [50]