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Table 1 Combined PFGE, MIRU-VNTR and IS900-RFLP profiles by Map origin

From: Occurrence of Mycobacterium avium subspecies paratuberculosis across host species and European countries with evidence for transmission between wildlife and domestic ruminants

Profile

  

No of isolates

Country1-Host2

PFGE3

MIRU-VNTR4

IS900-RFLP5

 

CZ

ES

FL

GR

NL

NO

SCO

[1-1]

1

C1

2

RD

   

G

  

[1-1]

2

C1

7

C, RD

C

C(2)

 

C, RD

  

[1-1]

2

C18

1

  

C

    

[1-1]

2

C5

1

    

C

  

[1-1]

6

C1

2

    

C(2)

  

[2-1]

1

C1

13

C(4), FD, M

C

C(2)

  

G(3), S

 

[2-1]

1

C9

1

H

      

[2-1]

1

C17

39

     

C, S

B, C(6), CR, F(2), H, R(13), RK, S(7), ST(3), W, WM

[2-1]

2

C17

2

      

C(2)

[2-1]

2

C1

9

C

FD

  

C(2), G, S(4)

  

[2-1]

2

C5

1

    

C

  

[2-1]

2

C36

1

    

C

  

[2-1]

5

C10

1

C

      

[2-1]

19

C17

1

      

S

[2-1]

24

C1

1

    

S

  

[2-1]

22

C38

1

    

G

  

[2-1]

25

C17

1

      

R

[2-10]

1

C1

1

     

G

 

[2-17]

2

C22

1

    

S

  

[2-19]

2

C5

2

   

G, S

   

[2-30]

1

C16

1

    

RD

  

[2-30]

25

C16

1

      

W

[3-2]

1

C17

3

      

F, G, J

[5-2]

1

C17

1

      

S

[9-7]

21

S4

1

      

S

[15-16]

38

C1

1

 

G

     

[15-25]

26

C1

7

 

G(7)

     

[16-11]

20

I5

1

 

G

     

[18-1]

13

C1

1

 

G

     

[20-1]

1

C1

1

C

      

[26-1]

35

C1

1

C

      

[27-18]

2

C27

1

 

C

     

[29-15]

36

C1

1

   

G

   

[29-15]

37

C1

3

   

G(3)

   

[30-21]

2

C1

1

    

G

  

[31-17]

69

C39

1

 

G

     

[32-29]

1

C17

1

      

ST

[34-22]

2

C1

2

    

RD(2)

  

[34-22]

8

C1

1

    

RD

  

[36-27]

1

C1

1

M

      

[37-23]

29

I4

1

FD

      

[40-28]

26

C1

1

 

G

     

[41-1]

1

C9

1

C

      

[58-64]

35

C1

1

M

      
  1. 1. Country: CZ Czech Republic, ES Spain, FL Finland, GR Greece, NL The Netherlands, NO Norway, SCO Scotland
  2. 2. Host: B badger (Meles meles), C cow (Bos taurus), CR crow (Corvus corone), F fox (Vulpes vulpes), FD fallow deer (Dama dama), G goat (Capra hircus), H hare (Lepus europaeus), J jackdaw (Corvus monedula), M moufflon (Ovis musimon), R rabbit (Oryctolagus cuniculus), RD red deer (Cervus elaphus), RK rook (Corvus frugilegus), S sheep (Ovis aries), ST stoat (Mustela erminea), W weasel (Mustela nivalis), WM wood mouse (Apodemus sylvaticus). The number of isolates obtained from each host species within a country is given in parenthesis.
  3. 3. Nomenclature as defined by Stevenson et al. 2002 [11]
  4. 4. Nomenclature as defined by Thibault et al. 2007 [56]
  5. 5. Nomenclature as defined by Pavlik et al. 1999 [50]