Skip to main content

Table 2 Characteristics of loci and Sawyer's test analysis for intragenic recombination in L. hongkongensis isolates

From: Development of a multi-locus sequence typing scheme for Laribacter hongkongensis, a novel bacterium associated with freshwater fish-borne gastroenteritis and traveler's diarrhea

Locus Size of sequenced fragment (bp) No. of alleles identified No. (%) of polymorphic nucleotide sites % G + C d n /d s SSCFa (P-value)b MCFc (P-value)
rho 399 31 40 (10.0%) 58.7% 0.0000 160937 (0)* 39 (1)
acnB 504 39 45 (8.9%) 66.6% 0.0043 281863 (0)* 43 (1)
ftsH 428 43 46 (10.7%) 63.4% 0.0126 392301 (0.53) 43 (1)
trpE 448 34 44 (9.8%) 59.4% 0.0265 174730 (0.46) 37 (1)
ilvC 362 22 16 (4.4%) 58.3% 0.0154 11688 (0.55) 14 (1)
thiC 473 45 101 (21.4%) 63.3% 0.0355 954286 (0)* 92 (1)
eno 454 31 40 (8.8%) 60.5% 0.0266 118330 (0.18) 33 (1)
  1. aSSCF, sum of the squares of condensed fragments
  2. bP-value indicating statistically significant (P < 0.05) evidence for recombination are marked with asterisks
  3. cMCF, maximum condensed fragment