Table 2 Characteristics of loci and Sawyer's test analysis for intragenic recombination in L. hongkongensis isolates
Locus | Size of sequenced fragment (bp) | No. of alleles identified | No. (%) of polymorphic nucleotide sites | % G + C | d n /d s | SSCFa (P-value)b | MCFc (P-value) |
|---|---|---|---|---|---|---|---|
rho | 399 | 31 | 40 (10.0%) | 58.7% | 0.0000 | 160937 (0)* | 39 (1) |
acnB | 504 | 39 | 45 (8.9%) | 66.6% | 0.0043 | 281863 (0)* | 43 (1) |
ftsH | 428 | 43 | 46 (10.7%) | 63.4% | 0.0126 | 392301 (0.53) | 43 (1) |
trpE | 448 | 34 | 44 (9.8%) | 59.4% | 0.0265 | 174730 (0.46) | 37 (1) |
ilvC | 362 | 22 | 16 (4.4%) | 58.3% | 0.0154 | 11688 (0.55) | 14 (1) |
thiC | 473 | 45 | 101 (21.4%) | 63.3% | 0.0355 | 954286 (0)* | 92 (1) |
eno | 454 | 31 | 40 (8.8%) | 60.5% | 0.0266 | 118330 (0.18) | 33 (1) |