Table 2 VNTR loci and primers used for their amplification a
From: MLVA distribution characteristics of Yersinia pestisin China and the correlation analysis
Locus | Core sequence | Repeat unit size (bp) | Forward and Reverse primer (5'-3') |
|---|---|---|---|
M76 | TGTGGTGATCTAAGCGCAACACA GTTAAAAACAGATTTTAA | 41 | F:GCGGCCTGATAAGGGATATTGGAAGC R:GGCGAAATTCATTAAAGAGGATCCTGACAC |
M73 | AATGCCTATTCCTCTGACAGAAT CCGTATC | 30 | F:GCTTTCTGGCAATGCGATAGTTAGGCATCTC R:GTTAATTTAACTCAATATTGTCGCTATGGT |
M72 | TTCATAGCTTCTATTATAGAGA | 22 | F:GCGACACGCCCTTTCAATGAGATACAC R:GTAGATCACCGCTAAATGCGAAGGTCCAC |
M66 | ATTTACGGTATAGCTACTGA | 20 | F:GAGATGGATTAACCAGATGTCTTAAAAACTATCGTAAC R:GCGAATCGGCGGCCCAAAC |
M61 | TTTCAAGCTGAATGTGTG | 18 | F:GCGCCACAATTAGGGCAACTGC R:GCCGCTTTAATGGTTTGTGAAATGAC |
ms01 | TGCAGTGAAAAGGTTAAC | 18 | F:CTAAGCACAATTGTTATGCTGAACC R:TACTGAATCTGCTTCATTGTTCAAA |
M59 | TTACTGATATGGGCTAG | 17 | F:GCTTAGCCGCCAGAAAAGGTGAGTTGGC R:GATAATGGCGGTAGCCGGAATCTGATAATCATC |
M58 | CATAGATAGCTAAACAA | 17 | F:GCGATAACCCACATTATCACAATAACCAACAC R:GCTGATGGAACCGGTATGCTGAATTTGC |
M55 | TATTGAGGAATGAATG | 16 | F:GTCATGGGTGATGCTGTTGCTCTCATTTTATAGTTGTAGTGA R:GCCTTAATGGTTGAATGCGCGAATGAGTCAGATAAC |
M54 | TTTATGGTTCAACTTG | 16 | F:GTATGCTTAGCGCCAGTGATAACGAGTC R:GATCGCGTCATCGGGGTTTGTC |
M52 | GTTGTAAAACCAGAT | 15 | F:GTGGCCTAACCCGTTTTACCGGTGTAGC R:GCGGTTTTGTCAATCACGAATCAGGACTC |
M51 | TTATCACGGTTGGTG | 15 | F:GCAACCCGCTGAAGTTGTAAAAACCGAC R:GCGTTGATCTTCGCGGCCTTCAC |
M49 | TTGTAACGACTGAT | 14 | F:GTAATACTTACGCCTTGGCAGCAGTGTTCACGAC R:GTGGGGTGTTCTACGGTGGATTGTTTTTAGGC |
M37 | ACTATCACCG | 10 | F:GCCACAGGAAGAGGACATTTCAGAGAAAAC R:GTTGCTAAAACGATACCGCTACGATCAGC |