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Table 1 PCR primers used for gene amplification and sequencing.

From: Genotypic comparison of Pantoea agglomeransplant and clinical strains

Gene(s)

Primer name

Sequence (5'-3')

Size (bp)

Tm (°C)

Reference

gyrB

gyr-320

TAARTTYGAYGAYAACTCYTAYAAAGT

970

50

[63]

 

rgyr-1260

CMCCYTCCACCARGTAMAGTTC

  

[63]

hrcN

hrcN-4r

CGAGCAGGAYTCGATGAACG

250

50

[57]

 

hrcN-5rR

CCGGWYTGGTATTCACCCAG

  

[57]

29-kbp GI

mutS-rev

CGCCATCGGGATCGGTTCGCC

554

60

This work

 

narL-rev

GCCGTCTGGGCGCTGCAGAACG

  

This work

paaABC

paaA-fw

CTCTTGCCAAAATGGATGGT

2398

55

This work

 

paaC-rev

TTGCAAATTCTGCACTCTCG

  

This work

pagRI

pagR-fw

GTGAAGGATACYTACTACAACG

1206-29

55

This work

 

pagI-rev

CGAATGCATTGACGGCATGG

  

This work

rrs

16S-8F

AGAGTTTGATCCTGGCTCAG

1503

48

[64]

 

16S-533R

TTACCGCGGCTGCTGGCAC

  

[64]

 

16S-609R

ACTACYVGGGTATCTAAKCC

  

[65]

 

16S-1492R

ACGGTTACCTTGTTACGACTT

  

[64]

  1. Tm = annealing temperature