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Table 2 Proteins encoded by IVIAT selected clones

From: Use of in vivo-induced antigen technology (IVIAT) for the identification of Streptococcus suis serotype 2 in vivo-induced bacterial protein antigens

Category Gene name Function and/or feature Bacterial cell sub-localization GenBank Accession number
Cell envelope
structure
ysirk1 YSIRK Gram-positive signal peptide cell wall EF127690
  ysirk2 YSIRK Gram-positive signal peptide cell wall EF127720
  ss-1616 hypothetical protein SsuiDRAFT 0718 cell wall EF127691
  cwh Cell wall hydrolase/autolysin, peptidoglycan catabolism cell wall EF127695
  trag TRAG protein, essential for DNA transfer in bacterial conjugation Membrane EF127701
  srt sortase-like protein/Sortase family Cytoplasmic EF127708
  nlpa NLPA lipoprotein Cytoplasmic EF127718
Regulation lac LacI:Periplasmic binding protein/LacI transcriptional Regulator   EF127711
  hprk HPr(Ser) kinase, two-component signal transduction system/two-component sensor activity/regulates carbohydrate Cytoplasmic EF127733
  flps FlpS, regulation in arginine deiminase system Cytoplasmic EF127749
Molecule synthesis ss-896 Tagatose-6-phosphate kinase/pfkB family carbohydrate kinase Cytoplasmic EF127693
  ss-1611 Aspartate kinase/Amino acid kinase family Cytoplasmic EF127726
  ss-1759 Amino acid biosynthesis/glutamate-cysteine ligase activity Cytoplasmic  
  pol1 DNA polymerase I Cytoplasmic EF127735
  cpn60 60 kDa chaperonin (Protein Cpn60) (groEL protein)/TCP-1/cpn60 chaperonin family Cytoplasmic EF127737
  prpn Primosomal protein n Cytoplasmic EF127740
  pol3 DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit, Gram-positive type Cytoplasmic EF127741
EF127751
Substance and energy metabolism gh3 Glycoside hydrolase, family 3, N-terminal/Tim barrel glycosyl hydrolase superfamily. carbohydrate metabolism/hydrolase activity, hydrolyzing O-glycosyl compounds Cytoplasmic EF127713
  ss-999 hypothetical protein, carbohydrate metabolism/hydrolase activity Cytoplasmic EF127746
  ss-1647 tRNA (guanine-N(7)-)-methyltransferase/Methyltransferase superfamily, Central intermediary metabolism unknown EF127722
  ss-862 Uracil DNA glycosylase/Uracil DNA glycosylase superfamily Cytoplasmic EF127729
  ss-802 ATPase Cytoplasmic Membrane EF127747
  ss-1766 protein metabolism/ATP-dependent Clp protease, ATP-binding subunit Cytoplasmic EF127719
  ss-607 ABC transporter Cytoplasmic Membrane EF127697
  sdh L-serine dehydratase, alpha subunit Cytoplasmic Membrane EF127704
  ss-1617 Fructokinase/Actin-like ATPase Superfamily unknown EF127707
  ppc Phosphoenolpyruvate carboxylase   EF127727
  ss-1305 ABC transporter Cytoplasmic Membrane EF127736
Transport ss-1955 conserved hypothetical protein, transport and binding unknown EF127692
  ss-273 ABC transporter, transport and binding/coupled to transmembrane movement of substances Cytoplasmic Membrane EF127694
  ss-1298 ABC transporter Cytoplasmic Membrane EF127714
  ss-1829 peptidase, S54 (rhomboid) family protein/Rhomboid family Cytoplasmic Membrane EF127742
  ss-403 PTS system sorbose subfamily IIB component cytoplasmic EF127754
Translation exc-b Excinuclease ABC, B subunit Cytoplasmic EF127698
EF127700
  ss-887 O-acetylhomoserine sulfhydrylase/PLP dependent aminotransferase superfamily Cytoplasmic EF127706
  ss-349 possible product: hypothetical protein SMU_684 Cytoplasmic EF127738
  ss-1935 Ribosomal protein S4, bacterial and organelle form Cytoplasmic EF127739
Others ss-154 3-phosphoglycerate kinase, phosphoglycerate kinase activity/glycolysis Cytoplasmic EF127702
  ss-485 Metal-dependent phosphohydrolase, HD subdomain/HD/PDEase superfamily Cytoplasmic EF127730
  ss-1478 Inorganic diphosphatase, Cytoplasmic EF127734
  smc SMC protein, N-terminal: Structural maintenance of chromosome protein SMC, C-terminal: SMCs flexible hinge Cytoplasmic EF127743
Function unknown g19 unknown   EF127696
  g59 Protein of unknown function DUF150 Cytoplasmic EF127717
  g77 unknown   EF127724
  g78 unknown   EF127725
  g98 hypothetical protein Franean1DRAFT_0529   EF127732
  g130 unknown   EF127744
  g132 unknown   EF127745
  1. † Putative functions of hypothetical proteins were determined from NCBI database and CBS Prediction Servers when available.
  2. ‡ Predicted by the PSORTb v.2.0 program.