Type of the product encoded by the differentially expressed gene | Up-regulated genes | Down-regulated genes |
---|---|---|
Ribosomal proteins and their modifiers | rpmE | rplQ, rpsQ, rplI, rpmG |
tRNA base modifiers | queA | alaS, truD, trmU, |
Transcription and transcription-related factors | Â | deaD, rnc, rph, nusA, nusB |
Amino acid biosynthetic enzymes | trpD, dapA, argD, proC, leuC, ilvH, tyrR | aroA, aroB, |
Periplasmic nitrate reductase (nap operon) | Â | napB, napG, napF, napD, napH |
Nitrite reductase (nrf operon) | Â | nrfB, nrfC |
Dimethyle sulfoxide reducatse (dms operon) | Â | dmsA, dmsB |
Hydrogenases | Â | hyaA, hybB |
Amino acid catabolism | Â | sdaA, aspA |
pyruvate formate-lyase 1-activating enzyme | Â | PflA |
Glycolysis and gluconeogenesis | gpmB, pepC | FruK |
TCA cycle enzymes | sucD, lpdA | Â |
Non-glucose hexose-monosaccharide metabolism enzymes | mtlD | nagZ |
Products of central intermediary metabolism | Â | ureA, ppx |
ATP synthase | Â | atpC, atpB |
Formate dehydrogenase | Â | fdhE |
Products involved in fermentation | dld, aldA | Â |
Regulatory proteins | narP, sixA, gntR, cysB, asnC, gcvA, rseA | arcA, iclR |
Cofactors | folA, folP, pdxY, thiH | hemB, chuW, lipA, ispA, ddc, dxs, ispE, iscA |