Table 5 Nucleotide sequence similarities (%) of the NC regions upstream of cadF (- like) gene(250 bp; upper right) and downstream of Cla_0387 (120 bp; lower left) among C. lari isolates
| Â | Campylobacter lari | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | C.lari JCM2530T | Â | 98.8 | 98.8 | 98.4 | 87.3 | 89.7 | 89.7 | 88.1 | 88.6 | 89.1 | 86.5 | 87.5 | 87.5 | 87.9 | 87.8 | 87.9 | 98.8 |
2 | C.lari 298 | 100.0 | Â | 100.0 | 99.6 | 88.1 | 89.7 | 89.7 | 88.2 | 88.6 | 88.8 | 86.9 | 87.2 | 87.2 | 87.5 | 87.5 | 87.5 | 100.0 |
3 | C.lari 300 | 100.0 | 100.0 | Â | 99.6 | 88.1 | 89.7 | 89.7 | 88.2 | 88.6 | 88.8 | 86.9 | 87.2 | 87.2 | 87.5 | 87.5 | 87.5 | 100.0 |
4 | C.lari 84C-1 | 100.0 | 100.0 | 100.0 | Â | 87.8 | 89.3 | 89.3 | 87.8 | 88.2 | 88.4 | 86.5 | 86.8 | 86.8 | 87.1 | 87.0 | 87.1 | 99.6 |
5 | UPTC 99 | 93.2 | 93.2 | 93.2 | 93.2 | Â | 95.6 | 95.6 | 96.0 | 96.0 | 90.0 | 89.0 | 85.0 | 85.0 | 85.9 | 85.4 | 85.3 | 88.1 |
6 | UPTC NCTC12892 | 93.2 | 93.2 | 93.2 | 93.2 | 98.3 | Â | 100.0 | 96.8 | 97.6 | 91.3 | 89.7 | 86.6 | 86.6 | 87.0 | 87.0 | 87.3 | 89.7 |
7 | UPTC NCTC12893 | 93.2 | 93.2 | 93.2 | 93.2 | 98.3 | 100.0 | Â | 96.8 | 97.6 | 91.3 | 89.7 | 86.6 | 86.6 | 87.0 | 87.0 | 87.3 | 89.7 |
8 | UPTC NCTC12894 | 93.2 | 93.2 | 93.2 | 93.2 | 100.0 | 98.3 | 98.3 | Â | 98.4 | 93.2 | 89.0 | 86.3 | 86.3 | 86.7 | 86.6 | 87.0 | 88.2 |
9 | UPTC NCTC12895 | 93.2 | 93.2 | 93.2 | 93.2 | 99.2 | 97.4 | 97.4 | 99.2 | Â | 92.5 | 89.4 | 85.6 | 85.6 | 85.9 | 85.9 | 86.2 | 88.6 |
10 | UPTC NCTC12896 | 88.1 | 88.1 | 88.1 | 88.1 | 92.4 | 90.7 | 90.7 | 92.4 | 91.5 | Â | 86.5 | 92.3 | 92.3 | 92.7 | 92.7 | 93.1 | 88.8 |
11 | UPTC CF89-12 | 89.7 | 89.7 | 89.7 | 89.7 | 91.5 | 91.5 | 91.5 | 91.5 | 90.6 | 85.6 | Â | 85.5 | 85.5 | 85.5 | 85.4 | 85.7 | 86.9 |
12 | UPTC A1 | 88.1 | 88.1 | 88.1 | 88.1 | 92.4 | 90.7 | 90.7 | 92.4 | 91.5 | 100.0 | 85.6 | Â | 100.0 | 99.2 | 98.8 | 99.2 | 87.2 |
13 | UPTC A2 | 88.1 | 88.1 | 88.1 | 88.1 | 92.4 | 90.7 | 90.7 | 92.4 | 91.5 | 100.0 | 85.6 | 100.0 | Â | 99.2 | 98.8 | 99.2 | 87.2 |
14 | UPTC A3 | 88.1 | 88.1 | 88.1 | 88.1 | 92.4 | 90.7 | 90.7 | 92.4 | 91.5 | 100.0 | 85.6 | 100.0 | 100.0 | Â | 99.2 | 99.2 | 87.5 |
15 | UPTC 89049 | 88.1 | 88.1 | 88.1 | 88.1 | 92.4 | 90.7 | 90.7 | 92.4 | 91.5 | 100.0 | 85.6 | 100.0 | 100.0 | 100.0 | Â | 98.8 | 87.5 |
16 | UPTC 92251 | 88.1 | 88.1 | 88.1 | 88.1 | 92.4 | 90.7 | 90.7 | 92.4 | 91.5 | 100.0 | 85.6 | 100.0 | 100.0 | 100.0 | 100.0 | Â | 87.5 |
17 | C. lari RM2100 | 100.0 | 100.0 | 100.0 | 100.0 | 93.2 | 93.2 | 93.2 | 93.2 | 93.2 | 88.1 | 89.7 | 88.1 | 88.1 | 88.1 | 88.1 | 88.1 | Â |