Pathway analysis for intracellular Porphyromonas gingivalis using a strain ATCC 33277 specific database

BMC Microbiology

Table 2 The 15 proteins with opposite abundance trends.

PGN0148	conserved domain protein
PGN0152	immunoreactive 61 kDa antigen PG91
PGN0294	ragB lipoprotein RagB
PGN0302	rubrerythrin
PGN0503	mmdC methylmalonyl-CoA decarboxylase gamma subunit
PGN0678	thiL thiamine monophosphate kinase
PGN0914	peptidase M24 family
PGN1032	hypothetical protein PG_0914
PGN1403	acetylornithine aminotransferase putative
PGN1529	oxidoreductase putative
PGN1590	rplM ribosomal protein L13
PGN1830	TonB-dependent receptor putative
PGN1849	rplO ribosomal protein L15
PGN1904	hemagglutinin protein HagB
PGN2070	hypothetical protein PG_2204

Out of 1,113 detected (see Table 1) using both annotations, these 15 proteins showed inconsistent trends for significant (q ≤ 0.01) abundance change depending on whether the W83 [10] or ATCC 33277 [11] genome annotations were used for database searching. The ORF numbers and descriptors given are those for ATCC 33277.

ISSN: 1471-2180