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Table 1 Selected proteins with altered abundance under H2 limitation.

From: Quantitative proteomics of nutrient limitation in the hydrogenotrophic methanogen Methanococcus maripaludis

ORF #

Function

Average log2 ratioa

 

Methanogenesis

 

MMP0820

FrcA, coenzyme F420-reducing hydrogenase

1.30 ± 0.56

MMP1382

FruA, coenzyme F420-reducing hydrogenase

0.77 ± 0.16

MMP1384

FruG, coenzyme F420-reducing hydrogenase

0.88

MMP1385

FruB, coenzyme F420-reducing hydrogenase

0.90

MMP1460

EhaM, energy-conserving hydrogenase A

0.56 ± 0.08

MMP1463

EhaP, energy-conserving hydrogenase A polyferredoxin subunit

0.64 ± 0.27

MMP0058

Mer, methylenetetrahydromethanopterin reductase

0.58

MMP1245

FwdF, formylmethanofuran dehydrogenase

0.20

MMP1247

FwdD, formylmethanofuran dehydrogenase

0.23

MMP1248

FwdA, formylmethanofuran dehydrogenase

0.27

MMP1249

FwdC, formylmethanofuran dehydrogenase

0.28 ± 0.07

MMP1697

HdrA, heterodisulfide reductase

0.35 ± 0.18

MMP1696

VhuD, F420 non-reducing hydrogenase

0.35 ± 0.11

MMP1695

VhuG, F420 non-reducing hydrogenase

0.34

MMP1694

VhuA, F420 non-reducing hydrogenase

0.29

MMP0372

Mtd, F420-dependent methylenetetrahydromethanopterin dehydrogenase

0.35 ± 0.10 (0.89)b

MMP1054

HdrC2, heterodisulfide reductase

0.33

MMP1053

HdrB2, heterodisulfide reductase

0.33 ± 0.11

MMP1563

MtrB, methyltransferase

0.27 ± 0.16

MMP1564

MtrA, methyltransferase

0.09

MMP0127

Hmd, H2-dependent methylenetetrahydromethanopterin dehydrogenase

-2.08 (-3.57)b

MMP0125

Hypothetical protein

-1.19

MMP0875

S-layer protein

-1.25

MMP1176

Putative iron transporter subunit

-0.83

MMP1206

GlnA, glutamine synthetase

-0.35

  1. aAverage of four log2 ratios: 15N-labeled H2-limited compared with 14N-labeled nitrogen-limited, 14N-labeled H2-limited compared with 15N-labeled nitrogen-limited, 15N-labeled H2-limited compared with 14N-labeled phosphate-limited, and 14N-labeled H2-limited compared with 15N-labeled phosphate limited. Standard deviations are given. Where protein abundance was affected by a second nutrient limitation (other than H2), the average is from two ratios only, each H2-limited compared with the non-affecting nutrient limitation.
  2. bValues in parentheses represent measurements of mRNA by qRT-PCR.