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Table 1 Genes tested in computational and biochemical assays

From: Characterization of Zur-dependent genes and direct Zur targets in Yersinia pestis

Gene ID Gene Computational marching of the Zur consensus Position of DNA fragment used
   Position § Sequence Score EMSA Footprinting
YPO3134 ykgM -34 to -16 GATGTTACATTATAACATA 15.6 -134 to +102 -134 to +102
YPO2060 znuC -45 to -27 AGCGTAATATTATAACATT 12.5 -185 to +52 -142 to +52
YPO2061 znuA -49 to -31 AATGTTATAATATTACGCT 12.5 -158 to +67 -142 to +52
YPO1963 astA -44 to -26 AAAGTTACGTCGTAACGTT 8.2 -165 to +124 -165 to +124
YPO1962 astC -478 to -460 AATATTATTACATAACCGT 4.4 -498 to -2 ---
YPO2374 rovA --- --- 0 -493 to -87 ---
YPO2367 gst --- --- 0 --- -571 to -217
  1. §, The numbers indicated the nucleotide position upstream the start code of each gene tested.