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Table 1 Genes tested in computational and biochemical assays

From: Characterization of Zur-dependent genes and direct Zur targets in Yersinia pestis

Gene ID

Gene

Computational marching of the Zur consensus

Position of DNA fragment used

  

Position §

Sequence

Score

EMSA

Footprinting

YPO3134

ykgM

-34 to -16

GATGTTACATTATAACATA

15.6

-134 to +102

-134 to +102

YPO2060

znuC

-45 to -27

AGCGTAATATTATAACATT

12.5

-185 to +52

-142 to +52

YPO2061

znuA

-49 to -31

AATGTTATAATATTACGCT

12.5

-158 to +67

-142 to +52

YPO1963

astA

-44 to -26

AAAGTTACGTCGTAACGTT

8.2

-165 to +124

-165 to +124

YPO1962

astC

-478 to -460

AATATTATTACATAACCGT

4.4

-498 to -2

---

YPO2374

rovA

---

---

0

-493 to -87

---

YPO2367

gst

---

---

0

---

-571 to -217

  1. §, The numbers indicated the nucleotide position upstream the start code of each gene tested.