Population segregation sites between hspIndia and hspLadakh. The overall consensus is shown at the top. Subpopulation consensus is shown above each subpopulation. Boxed sites shown are segments with at least two identical population segregation sites to the other population. Ladakh isolates (with names starting L) on the top panel and isolates from this study at the bottom panel. Genes and site positions were shown at top (reading vertically). ppa is not shown as it has no population segregation sites.