Table 3 List of genes showing down regulation of gene expression in P. putida WCS358 PpoR⁺⁺ strain

1.

PP3433

4-hydroxyphenylpyruvate dioxygenase

18.116

2.

PP2335

citrate synthase

12.097

3.

PP1743

acetate permease

9.109

4.

PP4621

homogentisate 1,2-dioxygenase

7.574

5.

PP1742

hypothetical protein

7.057

6.

PP4064

isovaleryl-CoA dehydrogenase

6.120

7.

PP4065

3-methylcrotonyl-CoA carboxylase, beta subunit, putative

6.042

8.

PP0882

dipeptide ABC transporter, periplasmic dipeptide-binding protein

5.896

9.

PP4402

2-oxoisovalerate dehydrogenase, beta subunit

5.677

10.

PP4864

branched-chain amino acid ABC transporter, ATP-binding protein

5.553

11.

PP4619

maleylacetoacetate isomerase, putative

5.245

12.

PP0545

aldehyde dehydrogenase family protein

5.053

13.

PP2333

transcriptional regulator, GntR family

4.694

14.

PP4866

branched-chain amino acid ABC transporter, permease protein

4.469

15.

PP1140

branched-chain amino acid ABC transporter, permease protein

4.185

16.

PP1000

ornithine carbamoyltransferase

4.006

17.

PP0999

carbamate kinase

3.475

18.

PP0193

hypothetical protein

3.470

19.

PP1001

arginine deiminase

3.335

20.

PP1297

general amino acid ABC transporter, periplasmic binding protein

3.111

21.

PP0764

hypothetical protein

3.100

22.

PP4650

ubiquinol oxidase subunit II, cyanide insensitive

3.073

23.

PP0751

malate:quinone oxidoreductase

2.972

24.

PP0989

glycine cleavage system protein H

2.759

25.

PP0397

hypothetical protein

2.676

26.

PP4975

long-chain acyl-CoA thioester hydrolase family protein

2.601

27.

PP5258

aldehyde dehydrogenase family protein

2.507

28.

PP1690

hypothetical protein

2.469

29.

PP2738

transcriptional regulator, putative

2.463

30.

PP4814

ATP-dependent protease La domain protein

2.338

31.

PP3122

CoA-transferase, subunit A, putative

2.176

32.

PP4194

citrate synthase

2.162

33.

PP0684

peptidyl-prolyl cis-trans isomerase, FKBP-type

2.077

34.

PP5319

hypothetical protein

2.013