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Table 2 List of genes showing up regulation of gene expression in P. putida WCS358 PpoR++ strain

From: PpoR is a conserved unpaired LuxR solo of Pseudomonas putida which binds N-acyl homoserine lactones

 

Gene name as annotated in P. putida KT2440

Function

Fold change

1.

PP0233

Taurine ABC transporter, periplasmic taurine-binding protein

5.016

2.

PP5172

hypothetical protein

4.503

3.

PP0237

sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA

3.801

4.

PP0236

NADH-dependent FMN reductase

3.751

5.

PP0170

ABC transporter, periplasmic binding protein

3.555

6.

PP0459

50S ribosomal protein L22

3.063

7.

PP0235

antioxidant protein LsfA

3.002

8.

PP0462

50S ribosomal protein L29

2.853

9.

PP0457

50S ribosomal protein L2

2.758

10.

PP0458

30S ribosomal protein S19

2.666

11.

PP5085

malic enzyme

2.665

12.

PP0461

50S ribosomal protein L16

2.631

13.

PP1465

50S ribosomal protein L19

2.626

14.

PP0463

30S ribosomal protein S17

2.602

15.

PP0455

50S ribosomal protein L4

2.592

16.

PP0464

50S ribosomal protein L14

2.563

17.

PP0460

30S ribosomal protein S3

2.455

18.

PP0465

50S ribosomal protein L24

2.431

19.

PP0453

30S ribosomal protein S10

2.426

20.

PP0721

50S ribosomal protein L25

2.334

21.

PP5168

sulfate ABC transporter, ATP-binding protein

2.297

22.

PP0466

50S ribosomal protein L5

2.236

23.

PP0475

50S ribosomal protein L36

2.213

24.

PP1600

outer membrane protein OmpH

2.205

25.

PP1464

tRNA (guanine-N(1)-)-methyltransferase

2.181

26.

PP0454

50S ribosomal protein L3

2.178

27.

PP0689

50S ribosomal protein L27

2.073

28.

PP0470

50S ribosomal protein L18

2.059