TY - JOUR AU - Blaut, M. AU - Collins, M. D. AU - Welling, G. W. AU - Dore, J. AU - Van Loo, J. AU - De Vos, W. PY - 2002 DA - 2002// TI - Molecular biological methods for studying the gut microbiota: the EU human gut flora project JO - Br J Nutr VL - 87 UR - https://doi.org/10.1079/BJN/2002539 DO - 10.1079/BJN/2002539 ID - Blaut2002 ER - TY - JOUR AU - Savage, D. C. PY - 1977 DA - 1977// TI - Microbial ecology of the gastrointestinal tract JO - Annu Rev Microbiol VL - 31 UR - https://doi.org/10.1146/annurev.mi.31.100177.000543 DO - 10.1146/annurev.mi.31.100177.000543 ID - Savage1977 ER - TY - JOUR AU - Zoetendal, E. G. AU - Collier, C. T. AU - Koike, S. AU - Mackie, R. I. AU - Gaskins, H. R. PY - 2004 DA - 2004// TI - Molecular ecological analysis of the gastrointestinal microbiota: a review JO - J Nutr VL - 134 ID - Zoetendal2004 ER - TY - JOUR AU - Eckburg, P. B. AU - Bik, E. M. AU - Berstein, C. N. AU - Purdom, E. AU - Dethlefsen, L. AU - Sargent, M. AU - Gill, S. R. AU - Nelson, K. E. AU - Relman, D. A. PY - 2005 DA - 2005// TI - Diversity of the human intestinal microbial flora JO - Science VL - 308 UR - https://doi.org/10.1126/science.1110591 DO - 10.1126/science.1110591 ID - Eckburg2005 ER - TY - JOUR AU - Manichanh, C. AU - Rigottier-Gois, L. AU - Bonnaud, E. AU - Gloux, K. AU - Pelletier, E. AU - Frangeul, L. AU - Nalin, R. AU - Jarrin, C. AU - Chardon, P. AU - Marteau, P. AU - Roca, J. AU - Doré, J. PY - 2006 DA - 2006// TI - Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach JO - Gut VL - 55 UR - https://doi.org/10.1136/gut.2005.073817 DO - 10.1136/gut.2005.073817 ID - Manichanh2006 ER - TY - JOUR AU - Lay, C. AU - Sutren, M. AU - Rochet, V. AU - Saunier, K. AU - Doré, J. AU - Rigottier-Gois, L. PY - 2005 DA - 2005// TI - Design and validation of 16S rDNA probes to enumerate members of the Clostridium leptumsubgroup in human faecal microbiota JO - Environ Microbiol VL - 7 UR - https://doi.org/10.1111/j.1462-2920.2005.00763.x DO - 10.1111/j.1462-2920.2005.00763.x ID - Lay2005 ER - TY - JOUR AU - Ley, R. E. AU - Turnbaugh, P. AU - Klein, S. AU - Gordon, J. I. PY - 2006 DA - 2006// TI - Microbial ecology: human gut microbes associated with obesity JO - Nature VL - 444 UR - https://doi.org/10.1038/4441022a DO - 10.1038/4441022a ID - Ley2006 ER - TY - JOUR AU - Harmsen, H. J. AU - Raangs, G. C. AU - He, T. AU - Degener, J. F. AU - Welling, G. W. PY - 2002 DA - 2002// TI - Extensive set of 16S rRNA-based probes for detection of bacteria in human feces JO - Appl Environ Microbiol VL - 68 UR - https://doi.org/10.1128/AEM.68.6.2982-2990.2002 DO - 10.1128/AEM.68.6.2982-2990.2002 ID - Harmsen2002 ER - TY - JOUR AU - Palmer, C. AU - Bik, E. M. AU - DiGiulio, D. B. AU - Relman, D. A. AU - Brown, P. O. PY - 2007 DA - 2007// TI - Development of the human infant intestinal microbiota JO - PLoS Biol VL - 5 UR - https://doi.org/10.1371/journal.pbio.0050177 DO - 10.1371/journal.pbio.0050177 ID - Palmer2007 ER - TY - JOUR AU - Bäckhed, F. AU - Ley, R. E. AU - Sonnenburg, J. L. AU - Peterson, D. A. AU - Gordon, J. L. PY - 2005 DA - 2005// TI - Host-bacterial mutualism in the human intestine JO - Science VL - 307 UR - https://doi.org/10.1126/science.1104816 DO - 10.1126/science.1104816 ID - Bäckhed2005 ER - TY - JOUR AU - Macpherson, A. J. AU - Harris, N. L. PY - 2004 DA - 2004// TI - Interactions between commensal intestinal bacteria and the immune system JO - Nat Rev Immunol VL - 4 UR - https://doi.org/10.1038/nri1373 DO - 10.1038/nri1373 ID - Macpherson2004 ER - TY - JOUR AU - Mowat, A. M. PY - 2003 DA - 2003// TI - Anatomical basis of tolerance and immunity to intestinal antigens JO - Nat Rev Immunol VL - 3 UR - https://doi.org/10.1038/nri1057 DO - 10.1038/nri1057 ID - Mowat2003 ER - TY - JOUR AU - Franks, A. H. AU - Harmsen, H. J. AU - Raangs, G. C. AU - Jansen, G. J. AU - Schut, F. AU - Welling, G. W. PY - 1998 DA - 1998// TI - Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes JO - Appl Environ Microbiol VL - 64 ID - Franks1998 ER - TY - JOUR AU - Hébuterne, X. PY - 2003 DA - 2003// TI - Gut changes attributed to ageing: effects on intestinal microflora JO - Curr Opin Clin Nutr Metab Care VL - 6 UR - https://doi.org/10.1097/00075197-200301000-00008 DO - 10.1097/00075197-200301000-00008 ID - Hébuterne2003 ER - TY - JOUR AU - Hopkins, M. J. AU - Macfarlane, G. T. PY - 2002 DA - 2002// TI - Changes in predominant bacterial populations in human faeces with age and with Clostridium difficileinfection JO - J Med Microbiol VL - 51 UR - https://doi.org/10.1099/0022-1317-51-5-448 DO - 10.1099/0022-1317-51-5-448 ID - Hopkins2002 ER - TY - JOUR AU - Van Tongeren, S. P. AU - Slaets, J. P. J. AU - Harmsen, H. J. M. AU - Welling, G. W. PY - 2005 DA - 2005// TI - Fecal microbiota composition and frailty JO - Appl Environ Microbiol VL - 71 UR - https://doi.org/10.1128/AEM.71.10.6438-6442.2005 DO - 10.1128/AEM.71.10.6438-6442.2005 ID - Van Tongeren2005 ER - TY - JOUR AU - Woodmansey, E. J. PY - 2007 DA - 2007// TI - Intestinal bacteria and ageing JO - J Appl Microbiol VL - 102 UR - https://doi.org/10.1111/j.1365-2672.2007.03400.x DO - 10.1111/j.1365-2672.2007.03400.x ID - Woodmansey2007 ER - TY - JOUR AU - Saunier, K. AU - Doré, J. PY - 2002 DA - 2002// TI - Gastrointestinal tract and the elderly: functional foods, gut microflora and healthy ageing JO - Dig Liver Dis VL - 34 UR - https://doi.org/10.1016/S1590-8658(02)80158-X DO - 10.1016/S1590-8658(02)80158-X ID - Saunier2002 ER - TY - JOUR AU - Hopkins, M. J. AU - Sharp, R. AU - Macfarlane, G. T. PY - 2001 DA - 2001// TI - Age and disease related changes in intestinal bacterial populations assessed by cell culture, 16S rRNA abundance, and community cellular fatty acid profiles JO - Gut VL - 48 UR - https://doi.org/10.1136/gut.48.2.198 DO - 10.1136/gut.48.2.198 ID - Hopkins2001 ER - TY - JOUR AU - Furet, J. P. AU - Firmesse, O. AU - Gourmelon, M. AU - Bridonneau, C. AU - Tap, J. AU - Mondot, S. AU - Doré, J. AU - Corthier, G. PY - 2009 DA - 2009// TI - Comparative assessment of human and farm animal fecal microbiota using real-time quantitative PCR JO - FEMS Microbiol Ecol VL - 68 UR - https://doi.org/10.1111/j.1574-6941.2009.00671.x DO - 10.1111/j.1574-6941.2009.00671.x ID - Furet2009 ER - TY - JOUR AU - Rigottier-Gois, L. AU - Bourhis, A. G. L. AU - Gramet, G. AU - Rochet, V. AU - Doré, J. PY - 2003 DA - 2003// TI - Fluorescent hybridisation combined with flow cytometry and hybridisation of total RNA to analyse the composition of microbial communities in human faeces using 16S rRNA probes JO - FEMS Microbiol Ecol VL - 43 UR - https://doi.org/10.1111/j.1574-6941.2003.tb01063.x DO - 10.1111/j.1574-6941.2003.tb01063.x ID - Rigottier-Gois2003 ER - TY - JOUR AU - Hayashi, H. AU - Sakamoto, M. AU - Benno, Y. PY - 2002 DA - 2002// TI - Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods JO - Microbiol Immunol VL - 46 UR - https://doi.org/10.1111/j.1348-0421.2002.tb02731.x DO - 10.1111/j.1348-0421.2002.tb02731.x ID - Hayashi2002 ER - TY - JOUR AU - Salminen, S. AU - Isolauri, E. PY - 2006 DA - 2006// TI - Intestinal colonization, microbiota and probiotics JO - J Pediatr VL - 149 UR - https://doi.org/10.1016/j.jpeds.2006.06.062 DO - 10.1016/j.jpeds.2006.06.062 ID - Salminen2006 ER - TY - JOUR AU - Haarman, M. AU - Knol, J. PY - 2006 DA - 2006// TI - Quantitative real-time PCR analysis of fecal Lactobacillus species in infants receiving a prebiotic infant formula JO - Appl Environ Microbiol VL - 72 UR - https://doi.org/10.1128/AEM.72.4.2359-2365.2006 DO - 10.1128/AEM.72.4.2359-2365.2006 ID - Haarman2006 ER - TY - JOUR AU - Harmsen, H. J. AU - Wildeboer-Veloo, A. C. AU - Raangs, G. C. AU - Wagendorp, A. A. AU - Klijn, N. AU - Bindels, J. G. AU - Welling, G. W. PY - 2000 DA - 2000// TI - Analysis of intestinal microflora development in breast-fed and formula-fed infants by using molecular identification and detection methods JO - J Pediatr Gastroenterol Nutr VL - 30 UR - https://doi.org/10.1097/00005176-200001000-00019 DO - 10.1097/00005176-200001000-00019 ID - Harmsen2000 ER - TY - JOUR AU - Bartosch, S. AU - Fite, A. AU - Macfarlane, G. T. AU - McMurdo, M. E. PY - 2004 DA - 2004// TI - Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota JO - Appl Environ Microbiol VL - 70 UR - https://doi.org/10.1128/AEM.70.6.3575-3581.2004 DO - 10.1128/AEM.70.6.3575-3581.2004 ID - Bartosch2004 ER - TY - JOUR AU - Hayashi, H. AU - Sakamoto, M. AU - Kitahara, M. AU - Benno, Y. PY - 2003 DA - 2003// TI - Molecular analysis of fecal microbiota in elderly individuals using 16S rDNA library and T-RFLP JO - Microbiol Immunol VL - 47 UR - https://doi.org/10.1111/j.1348-0421.2003.tb03418.x DO - 10.1111/j.1348-0421.2003.tb03418.x ID - Hayashi2003 ER - TY - JOUR AU - He, F. AU - Ouwehand, A. C. AU - Isolauri, E. AU - Hosoda, M. AU - Benno, Y. AU - Salminen, S. PY - 2001 DA - 2001// TI - Differences in composition and mucosal adhesion of bifidobacteria isolated from healthy adults and healthy seniors JO - Curr Microbiol VL - 43 UR - https://doi.org/10.1007/s002840010315 DO - 10.1007/s002840010315 ID - He2001 ER - TY - JOUR AU - Godon, J. J. AU - Zumstein, E. AU - Dabert, P. AU - Habouzit, F. AU - Moletta, R. PY - 1997 DA - 1997// TI - Molecular microbial diversity of an anaerobic digestor as determined by small-unit rDNA sequence analysis JO - Appl Environ Microbiol VL - 63 ID - Godon1997 ER - TY - JOUR AU - Lay, C. AU - Rigottier-Gois, L. AU - Holmstrom, K. AU - Rajilic, M. AU - Vaughan, E. E. AU - De Vos, W. M. AU - Collins, M. D. AU - Thiel, R. AU - Namsolleck, P. AU - Blaut, M. AU - Doré, J. PY - 2005 DA - 2005// TI - Colonic microbiota signatures across five northern European countries JO - Appl Environ Microbiol VL - 71 UR - https://doi.org/10.1128/AEM.71.7.4153-4155.2005 DO - 10.1128/AEM.71.7.4153-4155.2005 ID - Lay2005 ER - TY - JOUR AU - Firmesse, O. A. AU - Mogenet, A. J. L. AU - Bresson, J. L. G. AU - Corthier, G. J. P. AU - Furet, J. P. PY - 2008 DA - 2008// TI - Lactobacillus rhamnosusR11 consumed in a food supplement survived human digestive transist without modifying microbiota equilibrium as assessed by real time Polymerase Chain Reaction JO - J Mol Microbiol Biotechnol VL - 14 UR - https://doi.org/10.1159/000106087 DO - 10.1159/000106087 ID - Firmesse2008 ER - TY - JOUR AU - Lyons, S. R. AU - Griffen, A. L. AU - Leys, E. J. PY - 2000 DA - 2000// TI - Quantitative real-time PCR for Porphyromonas gingivalisand total bacteria JO - J Clin Microbiol VL - 38 ID - Lyons2000 ER -