Skip to main content

Advertisement

Table 2 Conserved nucleotide sequences 5' of biosynthetic operons.

From: The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens

Operon Locus tag and sequence coordinates
  G. metallireducens G. sulfurreducens
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase (gatCAB-mtnA-glnE-nth) Gmet_P0076
93465..93502
GSU3383.1
3719308..3719345
lysine (dapA) Gmet_P0211
244588..244640
GSU0157.1
176066..176117
aromatic amino acids (aroG-2) Gmet_R0069
384337..384528
GSUR082
3450692..3450963
cobalamin (cobUTSCB-thiC-2; cbiM-1-cbiQ-1-cbiO-1-cbiX-cobH-cbiD-cobLIM-cbiG-cobQ-cbiB-cobD) Gmet_R0070
513498..513761
no match
GSU3011.1
3302884..3303201
GSU3004.1
3296929..3297108
methionine (metC-1-metC-2; metX)1 Gmet_R0073
765279..765444
Gmet_R0129
3145553..3145656
GSUR063
1014004..1014271
GSU2461.2
2700118..2700220
leucine (leuA)2 Gmet_P1265
1425160..1425452
GSU1906.1
2085440..2085740
leucine/isoleucine (leuCD) Gmet_P1268
1428650..1428793
GSU1903.1
2082057..2082203
coenzyme A (panBC) Gmet_P1642
1843163..1843275
GSU1704.1
1868745..1868863
pyrimidines (pyrRBC-carAB) Gmet_P1768
1983157..1983191
GSU1269.1
1384886..1384920
tryptophan (iorAB-paaK) Gmet_P1827
2042198..2042288
GSU1739.1
1905464..1905561
purines, pyrimidines (purMN, rimI-pyrKD) Gmet_P1844
2056600..2056732
GSU1757.1
1920275..1920400
guanine (guaBA) Gmet_P2293
2600787..2600857
GSU2195.1
2408782..2408854
serine (serA) Gmet_P2378
2689446..2689518
GSU1197.1
1301091..1301163
thiamin (thiE/D-thiC-1; thiS-1-thiG-tenI)3 Gmet_R0131
3292750...3292897
Gmet_R0134
3319520..3319741
GSUR060
640780..640988
GSU0589.1
622533..622801
arginine (argBDFG) Gmet_P0203
3719308..3719345
GSU0149.1
167623..167663
  1. 1The sequence 5' of metC-1, metC-2, and metX is a SAM-responsive riboswitch.
  2. 2The sequence 5' of leuA is a T-box, an RNA structure that recognizes the aminoacylation state of tRNA.
  3. 3The sequence 5' of thiamin biosynthesis operons is a thiamin diphosphate-responsive riboswitch.