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Table 7 Genetic heterogeneity in the SS14 population isolated from rabbit testes

From: Complete genome sequence of Treponema pallidum ssp. pallidumstrain SS14 determined with oligonucleotide arrays

ORFa Genome positiona [GenBank:AE000520] sequence SS14 sequenceb position in ORF (Nichols) a aa change note
TP0117 135098 G G or C (5/6) 1600 P534 => A534  
  135107 T T or C (3/4) 1591 I531 => V531  
  135141 G G or A (5/2) 1557 no change  
  135144 T T or C (3/4) 1554 no change  
  135149 C C or T (5/2) 1549 A517 => T517  
  135220 G G or A (5/6) 1478 T493 => I493  
  135227 G G or A (6/6) 1471 P491 => S491  
  135235 G G or A (2/10) 1463 A488 => V488  
  135239 C C or T (2/10) 1459 G487 => R487  
  135251 A A or G (6/6) 1447 Y483 => H483  
TP0402 427435 C C or T (NA) 401 P134 => L134  
  427737 G G or T (NA) 703 A235 => S234  
TP0620 671746 T T or C (9/3) 1142 Q381 => R381  
  671751 T T or G (19/10) 1137 R379 => G379  
  671753 T T or C (19/10) 1135 R379 => G379  
  671763 C C or T (8/4) 1125 no change  
  671982 G G or C (12/6) 906 S302 => R302  
  672004 C C or T (12/6) 884 S295 => N295  
  672016 A G or A (12/6) 872 L291 => P291  
  672025 T T or C (11/7) 863 N288 => C288  
  672026 T T or A (11/6) 862 N288 => C288  
  672027 A A or G (11/6) 861 G287 => D287  
  672028 C C or T (12/5) 860 G287 => D287  
  672036 G G or T (11/6) 852 no change  
  672039 A A or G (NA) 849 P283 => N283  
  672040 G G or T (NA) 848 P283 => N283  
  672041 G G or T (12/6) 847 P283 => N283  
  672042 G G or A (NA) 846 D282 => S282  
  672043 T T or C (13/6) 845 D282 => S282  
  672044 C C or T (10/5) 844 D282 => S282  
  672154 G G or T (7/10) 734 T245 => K245  
  672286 G G or A (4/12) 602 T201 => M201  
Upstream of TP0620 672916-7 (-) (-) or C (6/6) position -30 from TP0620 homopolymeric stretch
  672944 A A or G (14/6) position -58 from TP0620  
TP0621 673088 T T or C (14/4) 2134 I712 => V712  
  673119 G G or A (14/4) 2103 no change  
  673425 C C or T (2/8) 1797 no change  
  673428 A A or G (2/8) 1794 no change  
  673511 A A or C (6/6) 1711 F571 => V571  
  673545 C C or T (9/4) 1677 no change  
  673550 A A or G (10/6) 1672 F558 => L558  
  673554 C C or T (10/6) 1668 no change  
TP0971 1054447 T T or C (NA) 301 K101 => E101  
TP1029 1123796 G G or A (5/6) 15 no change  
  1. ORF – open reading frame; aa – amino acid; NA – not available; aas described in [3]; bnumbers in parentheses show sequence reads for each alternative sequence.