|
ORFa
|
Genome positiona
|
[GenBank:AE000520] sequence
|
SS14 sequenceb
|
position in ORF (Nichols) a
|
aa change
|
note
|
|---|
|
TP0117
|
135098
|
G
|
G or C (5/6)
|
1600
|
P534 => A534
| |
| |
135107
|
T
|
T or C (3/4)
|
1591
|
I531 => V531
| |
| |
135141
|
G
|
G or A (5/2)
|
1557
|
no change
| |
| |
135144
|
T
|
T or C (3/4)
|
1554
|
no change
| |
| |
135149
|
C
|
C or T (5/2)
|
1549
|
A517 => T517
| |
| |
135220
|
G
|
G or A (5/6)
|
1478
|
T493 => I493
| |
| |
135227
|
G
|
G or A (6/6)
|
1471
|
P491 => S491
| |
| |
135235
|
G
|
G or A (2/10)
|
1463
|
A488 => V488
| |
| |
135239
|
C
|
C or T (2/10)
|
1459
|
G487 => R487
| |
| |
135251
|
A
|
A or G (6/6)
|
1447
|
Y483 => H483
| |
|
TP0402
|
427435
|
C
|
C or T (NA)
|
401
|
P134 => L134
| |
| |
427737
|
G
|
G or T (NA)
|
703
|
A235 => S234
| |
|
TP0620
|
671746
|
T
|
T or C (9/3)
|
1142
|
Q381 => R381
| |
| |
671751
|
T
|
T or G (19/10)
|
1137
|
R379 => G379
| |
| |
671753
|
T
|
T or C (19/10)
|
1135
|
R379 => G379
| |
| |
671763
|
C
|
C or T (8/4)
|
1125
|
no change
| |
| |
671982
|
G
|
G or C (12/6)
|
906
|
S302 => R302
| |
| |
672004
|
C
|
C or T (12/6)
|
884
|
S295 => N295
| |
| |
672016
|
A
|
G or A (12/6)
|
872
|
L291 => P291
| |
| |
672025
|
T
|
T or C (11/7)
|
863
|
N288 => C288
| |
| |
672026
|
T
|
T or A (11/6)
|
862
|
N288 => C288
| |
| |
672027
|
A
|
A or G (11/6)
|
861
|
G287 => D287
| |
| |
672028
|
C
|
C or T (12/5)
|
860
|
G287 => D287
| |
| |
672036
|
G
|
G or T (11/6)
|
852
|
no change
| |
| |
672039
|
A
|
A or G (NA)
|
849
|
P283 => N283
| |
| |
672040
|
G
|
G or T (NA)
|
848
|
P283 => N283
| |
| |
672041
|
G
|
G or T (12/6)
|
847
|
P283 => N283
| |
| |
672042
|
G
|
G or A (NA)
|
846
|
D282 => S282
| |
| |
672043
|
T
|
T or C (13/6)
|
845
|
D282 => S282
| |
| |
672044
|
C
|
C or T (10/5)
|
844
|
D282 => S282
| |
| |
672154
|
G
|
G or T (7/10)
|
734
|
T245 => K245
| |
| |
672286
|
G
|
G or A (4/12)
|
602
|
T201 => M201
| |
|
Upstream of TP0620
|
672916-7
|
(-)
|
(-) or C (6/6)
|
position -30 from TP0620
|
homopolymeric stretch
|
| |
672944
|
A
|
A or G (14/6)
|
position -58 from TP0620
| |
|
TP0621
|
673088
|
T
|
T or C (14/4)
|
2134
|
I712 => V712
| |
| |
673119
|
G
|
G or A (14/4)
|
2103
|
no change
| |
| |
673425
|
C
|
C or T (2/8)
|
1797
|
no change
| |
| |
673428
|
A
|
A or G (2/8)
|
1794
|
no change
| |
| |
673511
|
A
|
A or C (6/6)
|
1711
|
F571 => V571
| |
| |
673545
|
C
|
C or T (9/4)
|
1677
|
no change
| |
| |
673550
|
A
|
A or G (10/6)
|
1672
|
F558 => L558
| |
| |
673554
|
C
|
C or T (10/6)
|
1668
|
no change
| |
|
TP0971
|
1054447
|
T
|
T or C (NA)
|
301
|
K101 => E101
| |
|
TP1029
|
1123796
|
G
|
G or A (5/6)
|
15
|
no change
| |
- ORF – open reading frame; aa – amino acid; NA – not available; aas described in [3]; bnumbers in parentheses show sequence reads for each alternative sequence.
