Table 7 Genetic heterogeneity in the SS14 population isolated from rabbit testes
ORFa | Genome positiona | [GenBank:AE000520] sequence | SS14 sequenceb | position in ORF (Nichols) a | aa change | note |
|---|---|---|---|---|---|---|
TP0117 | 135098 | G | G or C (5/6) | 1600 | P534 => A534 | |
135107 | T | T or C (3/4) | 1591 | I531 => V531 | ||
135141 | G | G or A (5/2) | 1557 | no change | ||
135144 | T | T or C (3/4) | 1554 | no change | ||
135149 | C | C or T (5/2) | 1549 | A517 => T517 | ||
135220 | G | G or A (5/6) | 1478 | T493 => I493 | ||
135227 | G | G or A (6/6) | 1471 | P491 => S491 | ||
135235 | G | G or A (2/10) | 1463 | A488 => V488 | ||
135239 | C | C or T (2/10) | 1459 | G487 => R487 | ||
135251 | A | A or G (6/6) | 1447 | Y483 => H483 | ||
TP0402 | 427435 | C | C or T (NA) | 401 | P134 => L134 | |
427737 | G | G or T (NA) | 703 | A235 => S234 | ||
TP0620 | 671746 | T | T or C (9/3) | 1142 | Q381 => R381 | |
671751 | T | T or G (19/10) | 1137 | R379 => G379 | ||
671753 | T | T or C (19/10) | 1135 | R379 => G379 | ||
671763 | C | C or T (8/4) | 1125 | no change | ||
671982 | G | G or C (12/6) | 906 | S302 => R302 | ||
672004 | C | C or T (12/6) | 884 | S295 => N295 | ||
672016 | A | G or A (12/6) | 872 | L291 => P291 | ||
672025 | T | T or C (11/7) | 863 | N288 => C288 | ||
672026 | T | T or A (11/6) | 862 | N288 => C288 | ||
672027 | A | A or G (11/6) | 861 | G287 => D287 | ||
672028 | C | C or T (12/5) | 860 | G287 => D287 | ||
672036 | G | G or T (11/6) | 852 | no change | ||
672039 | A | A or G (NA) | 849 | P283 => N283 | ||
672040 | G | G or T (NA) | 848 | P283 => N283 | ||
672041 | G | G or T (12/6) | 847 | P283 => N283 | ||
672042 | G | G or A (NA) | 846 | D282 => S282 | ||
672043 | T | T or C (13/6) | 845 | D282 => S282 | ||
672044 | C | C or T (10/5) | 844 | D282 => S282 | ||
672154 | G | G or T (7/10) | 734 | T245 => K245 | ||
672286 | G | G or A (4/12) | 602 | T201 => M201 | ||
Upstream of TP0620 | 672916-7 | (-) | (-) or C (6/6) | position -30 from TP0620 | homopolymeric stretch | |
672944 | A | A or G (14/6) | position -58 from TP0620 | |||
TP0621 | 673088 | T | T or C (14/4) | 2134 | I712 => V712 | |
673119 | G | G or A (14/4) | 2103 | no change | ||
673425 | C | C or T (2/8) | 1797 | no change | ||
673428 | A | A or G (2/8) | 1794 | no change | ||
673511 | A | A or C (6/6) | 1711 | F571 => V571 | ||
673545 | C | C or T (9/4) | 1677 | no change | ||
673550 | A | A or G (10/6) | 1672 | F558 => L558 | ||
673554 | C | C or T (10/6) | 1668 | no change | ||
TP0971 | 1054447 | T | T or C (NA) | 301 | K101 => E101 | |
TP1029 | 1123796 | G | G or A (5/6) | 15 | no change | |