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Table 2 DDT sequencing of regions selected based on pilot SS14/Nichols comparison using microarray hybridization experiments

From: Complete genome sequence of Treponema pallidum ssp. pallidumstrain SS14 determined with oligonucleotide arrays

Region no. ORFa Size of sequenced region (nt) Left coordinatea Right coordinatea Newly found changes Confirmation of SNPs identified by CGSb
1 TP0017 848 18454 19301 - -
2 TP0070 339 75493 75831 - -
3 TP0094 1011 102879 103889 - -
4 TP0123 1083 143207 144289 - -
5 TP0192 748 206663 207410 - -
6 TP0200 264 210183 210446 - -
7 TP0291 834 304706 305539 - -
8 TP0319 1014 334847 335860 - 1 SNP
9 TP0321–TP0322 2640 336149 338788 - -
10 TP0323 851 338885 339735 - 1 SNP
11 TP0376 806 400903 401708 - -
12 TP0377 78 401851 401928 - -
13 TP0516 1533 556351 557883 - -
14 TP0519 1277 559215 560491 - -
15 TP0580 1242 630328 631569 - -
16 TP0587 183 639620 639802 - -
17 TP0633 776 691437 692212 - -
18 TP0683 1047 746899 747945 - -
19 TP0799–TP0800 2168 866136 868303 - -
20 TP0806 1397 875808 877204 - -
21 TP0807 165 877407 877571 - -
22 TP0808 187 877632 877818 - -
23 TP0877 998 953710 954707 - 2 SNPs
24 TP0933 2023 1013098 1015120 - -
25 TP0952 1438 1032341 1033778 - 1 SNP
26 TP0961 1216 1041973 1043188 - -
27 TP0980 975 1063047 1064021 - -
  1. ORF – open reading frame; nt – nucleotide; SNP – single nucleotide polymorphism; aas described in [3]; bSNPs identified using CGS in these regions were verified by DDT sequencing.