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Table 1 Bacterial strains and plasmids used in this study.

From: Genomic, genetic and structural analysis of pyoverdine-mediated iron acquisition in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25

Strain/plasmid

Relevant genotype and/or other characteristics

Reference

P. fluorescens

  

SBW25

Wild-type

[17]

PBR840

SBW25ΔpvdL or ΔPflu4387

This study

15F3

PBR840 with mini-Tn phoA3 disruption of secondary siderophore biosynthesis genes, GmR

S. Matthijs, unpublished

TR107.1.1a

SBW25 carrying the pvdS-'lacZ fusion, SmR

This study

TR107.2.1a

SBW25 carrying the pvdL-'lacZ fusion, SmR

This study

TR107.4.1a

SBW25 carrying the fpvI::'lacZ fusion, SmR

This study

TR107.5.1a

SBW25 carrying the fpvR::'lacZ fusion, SmR

This study

TR135.1.1a

SBW25 carrying the fpvA::'lacZ fusion, SmR

This study

TR137.2.1

TR107.2.1 with pTr130.1, GmR

This study

TR137.3.1

TR107.2.1 with pTr130.2, GmR

This study

TR137.4.1

TR107.2.1 with pTr130.3, GmR

This study

TR156.1.1

TR107.2.1 with pBroadgate-D, GmR

This study

TR138.2.1

TR135.1.1 with pTr130.1, GmR

This study

TR138.3.1

TR135.1.1 with pTr130.2, GmR

This study

TR138.4.1

TR135.1.1 with pTr130.3, GmR

This study

TR156.3.1

TR135.1.1 with pBroadgate-D

This study

TR168.1.1

TR107.5.1 with pTr130.1, GmR

This study

TR168.2.1

TR107.5.1 with pTr130.2, GmR

This study

TR168.3.1

TR107.5.1 with pTr130.3, GmR

This study

TR168.4.1

TR107.5.1 with pBroadgate-D

This study

Plasmids

  

pUIC3

Integration vector with 'lacZ, TcR

[20]

pHP45Ω

Source of the omega cassette, SmR

[51]

pIVET-Sm

pUIC3 with tet gene replaced by Smr/Spr Ω fragment from pHP45Ω, SmR

This study

pUIC3–40

pUIC3 containing pvdL deletion fragment

This study

pCR2.1

PCR product cloning vector, KmR

Invitrogen

pRK2013

helper plasmid, KmR, Tra+

[52]

pTR100.1.1

pIVET-Sm carrying the pvdS-'lacZ fusion

This study

pTR100.2.1

pIVET-Sm carrying the pvdL-'lacZ fusion

This study

pTR100.4.1

pIVET-Sm carrying the fpvI-'lacZ fusion

This study

pTR100.5.1

pIVET-Sm carrying the fpvR-'lacZ fusion

This study

pTR128.1.1

pIVET-Sm carrying the fpvA-'lacZ fusion

This study

pBroadgate

Gateway expression vector with Plac promoter, GmR

Thwaites and Mansfield

pBroadgate-D

pBroadgate with ccdB gene replaced with the linker fragment, GmR;

[53]

pTR130.1

pBroadgate::pvdS, GmR

This study

pTR130.2

pBroadgate::fpvI, GmR

This study

pTR130.3

pBroadgate::fpvR, GmR

This study

  1. a The 'lacZ fusion reporter was integrated into the PVD locus by insertion-duplication thus the gene function was not affected.