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Table 3 Matching parameters of genotypes and subgroups with probes used on the AT microarray (numbers represent mismatches)

From: Genotyping of Chlamydophila psittaci using a new DNA microarray assay based on sequence analysis of ompA genes

Probe category ABE:VD2-a ABE:VD2-b ABE:VD2-c ABE:VD2-d ABE:VD4-b ABE:VD4-c ABE:VD4-d CDFRY:VD2-b CDFRY:VD2c CDFRY:VD4-c CDRFY:VD4-d CF:VD4-a   M56:VD2-c WC:VD2-a WC:VD4-a
Probe VD2-02 VD2-03 VD2-04 VD2-12 VD2-15 VD2-24 VD2-25 VD2-31 VD2-32 VD2-33 VD2-34 VD4-11 VD4-12 VD4-13 VD4-21 VD4-22 VD4-24 VD4-31 VD4-32 VD4-33 VD4-35 VD2-11 VD2-13 VD2-14 VD2-21 VD2-23 VD4-23 VD4-25 VD4-34 VD4-36 VD4-02 VD4-03 VD2-22 VD2-01 VD4-01
Type                                    
A-VS1 0;1      2;3 0;1 0;1 1;2 1;2   0 1 1 0 2 1   3 0 2               
A-6BC 0      1 1 1 0 1   0 1 1 0 2 1   3 0 2               
A-8455 0      2 0 0 1 1   0 1 1 0 2 1   0 3                
B   0 1 0   1 1 1 0 1   1 0 1 1 1 0   3 0 2               
EB-E30   1 0   0 0 2     0 1 0 1 1 1 0    2 0               
EB-KKCP   0 1 1   2 2 1 0 1   1 0 1 1 1 0   3 0 2               
EB-859   1 0 1 3 1 1 1 0 1   1 0 1 1 1 0    2 0               
E   1 0   0 0 2     0 2 1 2 2 0 1 0   3 2               
C                         0;2        0     
D-NJ1                           0     0      
D-9N                           4          
F                          0     0    0    
R54                        0     0         
YP84                       0       0        
Mat116   2 2 2   2 0 0 1 1   0 1 1 0 2 1    1 1               
M56         1 1 0   0 1 1 0 2 1   3 0 2             0   
WC                                   0 0
1V      13                               
6N                           2          
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