Gene ID | Gene annotation | Fold Change (exp1, exp2, exp3) |
---|---|---|
Energy production and conversion | ||
RT0308 | hypothetical protein RT0308 [Rickettsia typhi str. Wilmington] | 1.5 (2.2, 1.4, 1.0) |
RT0346 | NADH dehydrogenase alpha subunit [Rickettsia typhi str. Wilmington] | 1.6 (1.2, 2.0, 1.8) |
RT0419* | succinyl-CoA synthetase alpha subunit [Rickettsia typhi str. Wilmington] | 1.9 (2.1, 1.7, 1.8) |
Carbohydrate transport and metabolism | ||
RT0478* | pyruvate phosphate dikinase [Rickettsia typhi str. Wilmington] | 1.6 (1.9, 1.5, 1.6) |
Coenzyme transport and metabolism | ||
RT0867 | lipoyltransferase [Rickettsia typhi str. Wilmington] | 1.6 (1.3, 1.9, 1.7) |
RT0530* | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Rickettsia typhi str. Wilmington] | 2.0 (2.0, 1.5, 2.3) |
RT0675* | ubiquinone/menaquinone biosynthesis methyltransferase [Rickettsia typhi str. Wilmington] | 2.8 (3.7, 2.4, 2.2) |
Lipid transport and metabolism | ||
RT0676* | hypothetical protein RT0676 [Rickettsia typhi str. Wilmington] | 1.8 (3.0, 1.5, 1.6) |
Translation | ||
RT0337 | 16S rRNA-processing protein [Rickettsia typhi str. Wilmington] | 1.9 (2, 1.3, 2.1) |
RT0604* | 30S ribosomal protein S21 [Rickettsia typhi str. Wilmington] | 2.2 (2.1, 2.6, 2.2) |
RT0014 | NTP polymerase. [Rickettsia typhi str. Wilmington] | 2.3 (5.6, 1.1, 1.5) |
RT0870* | 50S ribosomal protein L33 [Rickettsia typhi str. Wilmington] | 2.3 (2.3, 1.9, 2.5) |
RT0038 | 50S ribosomal protein L28 [Rickettsia typhi str. Wilmington] | 2.5 (4.1, 1.7, 1.3) |
RT0484 | hypothetical protein RT0484 [Rickettsia typhi str. Wilmington] | 1.6 (2.0, 1.6, 1.4) |
Replication, recombination and repair | ||
RT0339 | exodeoxyribonuclease VII small subunit [Rickettsia typhi str. Wilmington] | 1.6 (1.8,1.0,1.9) |
Cell wall/membrane biogenesis | ||
RT0815 | possible outer surface protein [Rickettsia typhi str. Wilmington] | 1.6 (2.3, 1.2, 1.2) |
RT0083 | hypothetical protein RT0083 [Rickettsia typhi str. Wilmington] | 1.7 (2.8, 1.1, 1.1) |
RT0694 | hypothetical protein RT0694 [Rickettsia typhi str. Wilmington] | 1.9 (2.6, 2.0, 1.3) |
Cell motility | ||
RT0457* | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 1.9 (2.1, 1.9, 1.5) |
Posttranslational modification, protein turnover, chaperones | ||
RT0620 | HSP-70 cofactor [Rickettsia typhi str. Wilmington] | 1.6 (1.7, 1.5, 1.5) |
RT0416 | SsrA-binding protein [Rickettsia typhi str. Wilmington] | 1.6 (1.5, 2.5, 1.0) |
RT0195* | probable ATP binding cassette transporter [Rickettsia typhi str. Wilmington] | 2.8 (2.1, 2.5, 5.2) |
Inorganic ion transport and metabolism | ||
RT0168 | probable periplasmic divalent cation tolerance protein CutA [Rickettsia typhi str. Wilmington] | 1.5 (1.3, 1.2, 2.1) |
RT0013 | probable zinc/manganese ABC transporter substrate binding protein | 1.8 (2.5, 1.6, 1.3) |
RT0523 | superoxide dismutase [Rickettsia typhi str. Wilmington] | 1.8 (1.8, 1.5, 2.0) |
Secondary metabolites biosynthesis, transport and catabolism | ||
RT0043* | hypothetical protein RT0043 [Rickettsia typhi str. Wilmington] | 1.6 (1.8, 1.6, 1.3) |
General function prediction only | ||
RT0576 | Sco2-like protein [Rickettsia typhi str. Wilmington] | 1.6 (1.7, 1.5, 1.5) |
RT0012 | hypothetical protein RT0012 [Rickettsia typhi str. Wilmington] | 1.6 (2.2, 1.3, 1.3) |
RT0138 | hypothetical protein RT0138 [Rickettsia typhi str. Wilmington] | 1.6 (1.4, 1.0, 2.2) |
RT0674 | ubiquinone biosynthesis protein [Rickettsia typhi str. Wilmington] | 1.6 (1.3, 1.4, 2.4) |
RP031 | no corresponding annotation for R. typhi | 1.8 (1.1, 2.9, 1.4) |
RP679 | no corresponding annotation for R. typhi | 2.1 (1.7, 1.9, 3.3) |
RT0362* | Sec7-domain containing protein transport protein [Rickettsia typhi str. Wilmington] | 2.6 (3.3, 5.6, 1.7) |
Function unknown | ||
RT0741 | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 1.5 (1.0, 2.0, 1.7) |
RT0716* | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 1.6 (1.6, 1.8, 1.5) |
RT0551 | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 1.7 (1.4, 1.8, 1.6) |
RP167 | no corresponding annotation for R. typhi | 1.9 (2.9, 1.7, 1.4) |
RT0160 | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 2.0 (2.4, 1.3, 2.1) |
RT0222 | hypothetical protein RT0222 [Rickettsia typhi str. Wilmington] | 2.0 (2.8, 1.2, 1.7) |
RT0069 | iron-binding protein IscA/HesB [Rickettsia typhi str. Wilmington] | 2.1 (2.2, 1.6, 2.1) |
RT0743 | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 2.1 (2.6, 1.1, 2.3) |
RT0541 | hypothetical protein RT0541 [Rickettsia typhi str. Wilmington] | 2.4 (2.3, 3.5, 2.3) |
Intracellular trafficking and secretion | ||
RT0053 | protein-export membrane protein [Rickettsia typhi str. Wilmington] | 1.6 (1.8, 2.2, 0.9) |
RT0164 | signal recognition particle protein [Rickettsia typhi str. Wilmington] | 1.7 (1.8, 1.2, 1.9) |
RT0280 | VirB8-like protein of the Type IV secretion system [Rickettsia typhi str. Wilmington] | 1.8 (2.6, 1.4, 1.6) |
RT0771* | VirB4 protein precursor [Rickettsia typhi str. Wilmington] | 1.9 (1.9, 2.1, 1.7) |
RT0278* | VirB8-like protein of type IV secretion system [Rickettsia typhi str. Wilmington] | 2.6 (3.6, 2.8, 1.8) |
not in COG | ||
RT0351 | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 1.5 (1.8, 1.0, 1.5) |
RT0767* | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 1.5 (1.6, 1.3, 1.7) |
RT0861 | hypothetical protein RT0861 [Rickettsia typhi str. Wilmington] | 1.6 (1.2, 2.1, 1.4) |
RT0080 | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 1.6 (2.2, 1.0, 1.3) |
RT0693 | bicyclomycin resistance protein [Rickettsia typhi str. Wilmington] | 1.6 (1.1, 1.8, 1.9) |
RT0156 | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 1.6 (2.4, 1.2, 1.5) |
RT0461 | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 1.6 (1.5, 1.6, 1.7) |
RT0097 | hypothetical protein RT0097 [Rickettsia typhi str. Wilmington] | 1.8 (2.5, 1.4, 1.2) |
RP084 | no corresponding annotation for R. typhi | 1.8 (2.7, 1.6, 1.5) |
RT0052 | 190 kDa antigen precursor [Rickettsia typhi str. Wilmington] | 1.8 (1.2, 1.6, 2.5) |
RT0286 | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 1.9 (1.4, 1.6, 3.3) |
RT0443 | 50S ribosomal protein L36 [Rickettsia typhi str. Wilmington] | 1.9 (1.9, 1.4, 2.2) |
RT0206 | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 2.0 (2.4, 1.6, 1.8) |
RT0246* | UDP-3-O- [3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Rickettsia typhi str. Wilmington] | 2.1 (2.5, 1.8, 2.0) |
RT0382 | hypothetical protein RT0382 [Rickettsia typhi str. Wilmington] | 2.2 (2.8, 2.0, 1.8) |
RT0279 | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 2.2 (5.2, 1.3, 1.3) |
RT0710* | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 2.3 (2.8, 1.7, 2.2) |
RT0269 | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 2.3 (1.8, 6.6, 1.3) |
RT0692* | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 2.7 (3.4, 1.7, 2.6) |
RT0806* | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 2.7 (2.3, 2.6, 3.3) |
RT0709* | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 2.9 (2.5, 3.1, 3.1) |
RT0071 | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 3.2 (2.9, 1.5, 6.0) |
RT0268* | rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] | 6.2 (9.0, 6.1, 4.0) |