|
Genus species
|
Seq
|
%
|
Gram
|
Aerotolerance
|
Shape
|
|---|
|
Staphylococcus aureus *
|
70
|
39.33
|
+
|
facultative
|
Cocci
|
|
Anaerococcus lactolyticus
|
16
|
8.99
|
+
|
anaerobic
|
Cocci
|
|
Anaerococcus vaginalis
|
15
|
8.43
|
+
|
anaerobic
|
cocci
|
|
Bacterioides fragilis
|
7
|
3.93
|
-
|
anaerobic
|
rod
|
|
Finegoldia magna
|
6
|
3.37
|
+
|
anaerobic
|
cocci
|
|
Morganella morganii
|
5
|
2.81
|
-
|
Facultative anaerobe
|
rod
|
|
Enterococcus faecalis*
|
5
|
2.81
|
+
|
facultative
|
cocci
|
|
Peptoniphilus harei
|
5
|
2.81
|
+
|
anaerobic
|
cocci
|
|
Clostridium novyi
|
4
|
2.25
|
+
|
anaerobic
|
rod
|
|
Veillonella atypica
|
4
|
2.25
|
-
|
anaerobic
|
cocci
|
|
Abiotrophia para-adiacens
|
4
|
2.25
|
+
|
anaerobic
|
cocci
|
|
Veillonella parvula
|
4
|
2.25
|
-
|
anaerobic
|
cocci
|
|
Citrobacter murliniae *
|
3
|
1.69
|
-
|
facultative anaerobe
|
rod
|
|
Haemophilus spp.
|
3
|
1.69
|
-
|
facultative
|
rod
|
|
Clostridium spp.
|
3
|
1.69
|
+
|
anaerobic
|
rod
|
|
Haemophilus segnis
|
3
|
1.69
|
-
|
faculative
|
rod
|
|
Enterococcus avium*
|
3
|
1.69
|
+
|
facultative
|
cocci
|
|
Proteus spp.*
|
2
|
1.12
|
-
|
Facultative anaerobe
|
rod
|
|
Enterobacter aerogenes
|
2
|
1.12
|
-
|
facultative
|
rod
|
|
Dialister spp.
|
2
|
1.12
|
-
|
anaerobic
|
rod
|
|
Peptoniphilus asaccharolyticus
|
2
|
1.12
|
+
|
anaerobic
|
cocci
|
|
Enterobacter cloacae
|
1
|
0.56
|
-
|
Facultative anaerobe
|
rod
|
|
Klebsiella oxytoca*
|
1
|
0.56
|
-
|
Facultative anaerobe
|
rod
|
|
Escherichia coli
|
1
|
0.56
|
-
|
facultative
|
rod
|
|
Pseudoalteromonas spp.
|
1
|
0.56
|
-
|
facultative
|
rod
|
|
Porphyromonas levii
|
1
|
0.56
|
-
|
anaerobic
|
rod
|
|
Delftia acidovorans
|
1
|
0.56
|
-
|
aerobic
|
rod
|
|
Dialister invisus
|
1
|
0.56
|
-
|
anaerobic
|
rod
|
|
Staphylococcus epidermidis*
|
1
|
0.56
|
+
|
facultative
|
cocci
|
|
Staphylococcus spp.*
|
1
|
0.56
|
+
|
facultative
|
cocci
|
|
Granulicatella spp.
|
1
|
0.56
|
+
|
anaerobic
|
cocci
|
- This table provides the identified genera of the bacteria found using shotgun Sanger sequencing (FRACS) in the D sample, the number of sequences corresponding to this genus, the known gram staining properties, the aerotolerance (anaerobic, anaerobic, or facultative anaerobic) nature of the genus, and the shape of the genus. The asterisk * identifies bacteria previously cultured from a single culture result from each subject's medical record from subjects in the D pool. Bacteria that were cultured and were not found using FRACSS include Pseudomonas, Serratia, and Streptococcus. The % represents the percentage of the total sequences analyzed within the sample.
