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Table 1 Probe sequences, target organisms and complementary zip-code sequences

From: Universal ligation-detection-reaction microarray applied for compost microbes

Probe name

Target organism

Discriminating probe

PenCtr (A26)

Penicillium citrinum

GCCTCGGCGGGCCCC

Pezizomycota (A29)

various Penicillia and other

GTCCGGTCCTCGAGCGTATGG

NP101 (A45)

Environmental clone from compost

ATCAAAGTGCTGCAGGGCT

PenCom (A50)

Penicillium commune

CCCCGTCCTCCGATCTCCG

IssOr (A52)

Issatschenkia orientalis

GCGGACGACGTGTAAAGAGC

CanEt1 (A53)

Candida ethanolica

ACGCTTGGGGTCTCCGAG

GalGe (A54)

Galactomyces geotrichum

ACAACACTATTCAACCTCAGATCA

TherLa (A55)

Thermomyces lanuginosus

CACTGTGAACGCTTTTGTGAA

CanEt2 (A56)

Candida ethanolica

CACGAGCGAACTAGAACAGG

GeoEme (A57)

Geosmithia emersonii

AGACCCTCGTGAACGCTGT

AspFum (A58)

Aspergillus fumigatus

AGACCCCAACATGAACGCTG

Emesp A(65)

Emericella sp, Trichocomaceae sp.

CCGGGGACCACTGAACTTC

AbsCor (A66)

Absidia corymbifera

AGGTCTTCTCTTAAGGTTCCTCAC

PichFerm2 (A67)

Pichia fermentas

TTCTTGCGCAAGCAGAGTTG

KlyMa1 (A83)

Kluyveromyces marxianus

GCTTAATTGCGCGGCCAG

KlyMa2 (A84)

Kluyveromyces marxianus

TCATCCTCTGCTATCAGTTTTCTA

CanRu (A85)

Environmental clone similar to C. rugosa

ACAATAATTCAACATTGTGTCAGAG

Pichferm (A86)

Pichia fermentans and P. kluyveri

TGAACGCACATTGCGCCC

Probe name

Common probe

Zip code

PenCtr (A26)

GCGCCCGCCGACGG

GTACTAGCATATCATCGACG

Pezizomycota (A29)

GGCTTTGTCACCCGCTCTGTAG

GTTCATCACGAGTGCGTAGA

NP101 (A45)

AGCGCGCCTCCGTGTAG

CGTACAGTAAGTATGATGCC

PenCom (A50)

GGGGACGGGCCCGAAAGG

TTAATTGACTTCGCTCCAGC

IssOr (A52)

GTCGGAGCTGCGACTCGC

AAATCAGCAAACGGGCTCCG

CanEt1 (A53)

CACTATGAGCTCGACCTCAGAT

GAATTGATAATCGCAGCCAC

GalGe (A54)

AGTAGGATTACCCGCTGAACTTAA

GATATAGGAATGGCGCATAC

TherLa (A55)

TGCGAGGATTGTCTGAGTGAC

CTCATCGGAAGGGCTCGTAA

CanEt2 (A56)

ACGCTTGGGGTCTCCGAG

ACAGATGGAAAGGCAGTTCT

GeoEme (A57)

CTTGAACAAAGGTTGCGGTCT

TTTGGTAGCTGAGTGCCCTA

AspFum (A58)

TTCTGAAAGTATGCAGTCTGAGTTA

TAACTGGTTTGACGCCACGC

Emesp A(65)

ATGCCTGAGAGTGATGCAGTC

CTTCTGTCAATATGGGTACG

AbsCor (A66)

AGTTATGTGCAATGTTGGGTCAC

TATTTCGAGATATGAGGCGC

PichFerm2 (A67)

AGAACAGGCTATGCCTTTTTCG

TTGATCGTAGATTCGTGAGC

KlyMa1 (A83)

TTCTTGATTCTCTGCTATCAGTTTT

CACTAATTCAGACGAAGCCG

KlyMa2 (A84)

TTTCTCATCCTAAACACAATGGAG

GACCCTATCAGACAGATGCA

CanRu (A85)

CAATAACATCTAAAACCGATCATC

CACGCATCAAGACAGTATCG

Pichferm (A86)

CATGGTATTCCATGGGGCAT

CAGCTCCTAAGACTTGGACA

B3 control

 

TCTCGGGCTCAGTGCATTGA